1 HisKA_3#1
573-639 aa · 67 aa · 8.7% of protein
Raw token
HisKA_3:573:0.000000187:639:68:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JFU23_RS13700
Histidine kinase, Classic
Bacillus sp. TH50 · GCF_016650565
ClassHKTypeClassicLength771 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_016650565#JFU23_RS13700Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length771 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage160 / 771 aa (20.8%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa771 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
678-770 aa · 93 aa · 12.1% of protein
Raw token
HATPase_c:678:0.00000000000000856:770:106:109- Raw architecture: HisKA_3:573:0.000000187:639:68:68#HATPase_c:678:0.00000000000000856:770:106:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_016650565::NZ_JAEKFM010000003.1::G00027
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2611219-2614193Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJFU23_13700RefSeq proteinWP_201032098.1
Context group ID
GCF_016650565::NZ_JAEKFM010000003.1::G00027Context members
JFU23_RS13700JFU23_RS13705
Partner locus tags
JFU23_RS13700JFU23_RS13705
Partner old locus tags
JFU23_13700JFU23_13705
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_201032098.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJFU23_RS13700Primary locus identifier stored in the genes table.
Old locus tagJFU23_13700Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAEKFM010000003.1Sequence record reported by the local genomic context database.
Genomic interval2 611 219-2 613 534 nt2 316 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 611 219-2 614 193 ntGCF_016650565::NZ_JAEKFM010000003.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016650565::NZ_JAEKFM010000003.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAEKFM010000003.1All displayed genes belong to this local TCS context.
Neighborhood span2 611 219-2 614 193 nt2 975 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 611 219 nt2 614 193 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JFU23_RS13700GCF_016650565#JFU23_RS13700
HKClassicCurrent focus
2 611 219-2 613 534 nt · Forward (+)
JFU23_RS13705GCF_016650565#JFU23_RS13705
RRNarL
2 613 540-2 614 193 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_016650565#JFU23_RS13700The current gene is the representative for this cluster.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0617377
Simplified PFAM architecture for HKOC_0617377
PFAM domain coverage: 156 / 771 aa (20.2%)
1 aa771 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[573-638] | HATPase_c[681-770]
- Domain count: 2
- Matched identifier: HKOC_0617377
- Positioned domains: HisKA_3 573-638 ; HATPase_c 681-770
Cluster members and taxonomy
Representative gene: GCF_016650565#JFU23_RS13700
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 796 414 · GCF_016650565
AssemblyASM1665056v1 · Contighaploid
Genome composition5 932 849 bp · 35,5% GCBacillus sp. TH50
Signal transduction countsGenes 112 · HK 60 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key