1 Response_reg#1
4-113 aa · 110 aa · 47.6% of protein
Raw token
Response_reg:4:9.52e-28:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JFU23_RS12150
Response regulator OmpR family
Bacillus sp. TH50 · GCF_016650565
ClassRRTypeOmpRLength231 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_016650565#JFU23_RS12150Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length231 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 231 aa (80.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa231 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-225 aa · 75 aa · 32.5% of protein
Raw token
Trans_reg_C:151:8.1e-25:225:76:77- Raw architecture: Response_reg:4:9.52e-28:113:111:111#Trans_reg_C:151:8.1e-25:225:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_016650565::NZ_JAEKFM010000003.1::G00023
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2333519-2335239Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJFU23_12150RefSeq proteinWP_002089212.1
Context group ID
GCF_016650565::NZ_JAEKFM010000003.1::G00023Context members
JFU23_RS12150JFU23_RS12155
Partner locus tags
JFU23_RS12150JFU23_RS12155
Partner old locus tags
JFU23_12150JFU23_12155
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002089212.1Primary protein accession used for annex mappings.
UniProt accessionA0A4U3AI57Primary UniProt accession resolved in the annex database.
UniProt IDA0A4U3AI57_BACMYDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJFU23_RS12150Primary locus identifier stored in the genes table.
Old locus tagJFU23_12150Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAEKFM010000003.1Sequence record reported by the local genomic context database.
Genomic interval2 333 519-2 334 214 nt696 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 333 519-2 335 239 ntGCF_016650565::NZ_JAEKFM010000003.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016650565::NZ_JAEKFM010000003.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAEKFM010000003.1All displayed genes belong to this local TCS context.
Neighborhood span2 333 519-2 335 239 nt1 721 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 333 519 nt2 335 239 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JFU23_RS12150GCF_016650565#JFU23_RS12150
RROmpRCurrent focus
2 333 519-2 334 214 nt · Forward (+)
JFU23_RS12155GCF_016650565#JFU23_RS12155
HKClassic
2 334 217-2 335 239 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000290975#IC3_RS16465Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1158996
Simplified PFAM architecture for RROC_1158996
PFAM domain coverage: 184 / 231 aa (79.7%)
1 aa231 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[151-225]
- Domain count: 2
- Matched identifier: RROC_1158996
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 151-225 ; Trans_reg_C 151-225
Cluster members and taxonomy
Representative gene: GCF_000290975#IC3_RS16465
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 796 414 · GCF_016650565
AssemblyASM1665056v1 · Contighaploid
Genome composition5 932 849 bp · 35,5% GCBacillus sp. TH50
Signal transduction countsGenes 112 · HK 60 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key