1 HAMP#1
205-269 aa · 65 aa · 12.9% of protein
Raw token
HAMP:205:0.00000000551:269:65:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JFU23_RS12090
Histidine kinase, Classic
Bacillus sp. TH50 · GCF_016650565
ClassHKTypeClassicLength502 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_016650565#JFU23_RS12090Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length502 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage241 / 502 aa (48.0%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa502 aa
Domain-by-domain annotation3 items
2 HisKA#2
280-347 aa · 68 aa · 13.5% of protein
Raw token
HisKA:280:0.00000000000000679:347:68:643 HATPase_c#3
394-501 aa · 108 aa · 21.5% of protein
Raw token
HATPase_c:394:1.63e-20:501:109:109- Raw architecture: HAMP:205:0.00000000551:269:65:69#HisKA:280:0.00000000000000679:347:68:64#HATPase_c:394:1.63e-20:501:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_016650565::NZ_JAEKFM010000003.1::G00022
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2321511-2323704Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJFU23_12090RefSeq proteinWP_201031977.1
Context group ID
GCF_016650565::NZ_JAEKFM010000003.1::G00022Context members
JFU23_RS12090JFU23_RS12095
Partner locus tags
JFU23_RS12090JFU23_RS12095
Partner old locus tags
JFU23_12090JFU23_12095
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_201031977.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJFU23_RS12090Primary locus identifier stored in the genes table.
Old locus tagJFU23_12090Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAEKFM010000003.1Sequence record reported by the local genomic context database.
Genomic interval2 321 511-2 323 019 nt1 509 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 321 511-2 323 704 ntGCF_016650565::NZ_JAEKFM010000003.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016650565::NZ_JAEKFM010000003.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAEKFM010000003.1All displayed genes belong to this local TCS context.
Neighborhood span2 321 511-2 323 704 nt2 194 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 321 511 nt2 323 704 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JFU23_RS12090GCF_016650565#JFU23_RS12090
HKClassicCurrent focus
2 321 511-2 323 019 nt · Reverse (-)
JFU23_RS12095GCF_016650565#JFU23_RS12095
RROmpR
2 323 003-2 323 704 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_016650565#JFU23_RS12090The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1465664
Simplified PFAM architecture for HKOC_1465664
PFAM domain coverage: 218 / 502 aa (43.4%)
1 aa502 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[225-268] | HisKA[280-346] | HATPase_c[394-500]
- Domain count: 3
- Matched identifier: HKOC_1465664
- Positioned domains: HAMP 225-268 ; HisKA 280-346 ; HATPase_c 394-500
Cluster members and taxonomy
Representative gene: GCF_016650565#JFU23_RS12090
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 796 414 · GCF_016650565
AssemblyASM1665056v1 · Contighaploid
Genome composition5 932 849 bp · 35,5% GCBacillus sp. TH50
Signal transduction countsGenes 112 · HK 60 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key