1 Response_reg#1
2-104 aa · 103 aa · 44.2% of protein
Raw token
Response_reg:2:6.75e-17:104:106:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IHV19_RS09475
Response regulator LytTR family
Bifidobacterium longum subsp. longum · GCF_016648975
ClassRRTypeLytTRLength233 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_016648975#IHV19_RS09475Stable P2CS identifier used across views.
GenomeGCF_016648975Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length233 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage189 / 233 aa (81.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa233 aa
Domain-by-domain annotation2 items
2 LytTR#2
134-219 aa · 86 aa · 36.9% of protein
Raw token
LytTR:134:3.12e-20:219:91:98- Raw architecture: Response_reg:2:6.75e-17:104:106:111#LytTR:134:3.12e-20:219:91:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_016648975::NZ_JACZEK010000005.1::G00012
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span573182-573883Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIHV19_09465RefSeq proteinWP_328702003.1
Context group ID
GCF_016648975::NZ_JACZEK010000005.1::G00012Context members
IHV19_RS09475
Partner locus tags
IHV19_RS09475
Partner old locus tags
IHV19_09465
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_328702003.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIHV19_RS09475Primary locus identifier stored in the genes table.
Old locus tagIHV19_09465Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JACZEK010000005.1Sequence record reported by the local genomic context database.
Genomic interval573 182-573 883 nt702 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span573 182-573 883 ntGCF_016648975::NZ_JACZEK010000005.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016648975::NZ_JACZEK010000005.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JACZEK010000005.1All displayed genes belong to this local TCS context.
Neighborhood span573 182-573 883 nt702 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
573 182 nt573 883 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
IHV19_RS09475GCF_016648975#IHV19_RS09475
RRLytTRCurrent focus
573 182-573 883 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_016648975#IHV19_RS09475The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1097604
Simplified PFAM architecture for RROC_1097604
PFAM domain coverage: 192 / 233 aa (82.4%)
1 aa233 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[2-107] | LytTR[134-219]
- Domain count: 2
- Matched identifier: RROC_1097604
- Positioned domains: Response_reg 2-107 ; LytTR 134-219
Cluster members and taxonomy
Representative gene: GCF_016648975#IHV19_RS09475
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 679 · GCF_016648975
AssemblyASM1664897v1 · Contighaploid
Genome composition2 464 874 bp · 60,0% GCBifidobacterium longum subsp. longum
Signal transduction countsGenes 27 · HK 12 · RR 13CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key