1 Response_reg#1
9-127 aa · 119 aa · 44.4% of protein
Raw token
Response_reg:9:7.66e-30:127:119:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IHV18_RS01035
Response regulator NarL family
Bifidobacterium breve · GCF_016648955
ClassRRTypeNarLLength268 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_016648955#IHV18_RS01035Stable P2CS identifier used across views.
GenomeGCF_016648955Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length268 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage177 / 268 aa (66.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HTH_LUXR#2
205-262 aa · 58 aa · 21.6% of protein
Raw token
HTH_LUXR:205:5.24e-24:262:58:58- Raw architecture: Response_reg:9:7.66e-30:127:119:111#HTH_LUXR:205:5.24e-24:262:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_016648955::NZ_JACZEM010000001.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span235397-238693Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIHV18_01035RefSeq proteinWP_032740240.1
Context group ID
GCF_016648955::NZ_JACZEM010000001.1::G00004Context members
IHV18_RS01035IHV18_RS01040
Partner locus tags
IHV18_RS01035IHV18_RS01040
Partner old locus tags
IHV18_01035IHV18_01040
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_032740240.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIHV18_RS01035Primary locus identifier stored in the genes table.
Old locus tagIHV18_01035Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JACZEM010000001.1Sequence record reported by the local genomic context database.
Genomic interval235 397-236 203 nt807 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span235 397-238 693 ntGCF_016648955::NZ_JACZEM010000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016648955::NZ_JACZEM010000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JACZEM010000001.1All displayed genes belong to this local TCS context.
Neighborhood span235 397-238 693 nt3 297 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
235 397 nt238 693 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
IHV18_RS01035GCF_016648955#IHV18_RS01035
RRNarLCurrent focus
235 397-236 203 nt · Reverse (-)
IHV18_RS01040GCF_016648955#IHV18_RS01040
HKClassic
236 225-238 693 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000568895#B2L_RS02185Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0619640
Simplified PFAM architecture for RROC_0619640
PFAM domain coverage: 174 / 268 aa (64.9%)
1 aa268 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[9-126] | GerE[207-262]
- Domain count: 2
- Matched identifier: RROC_0619640
- Positioned domains: Response_reg 9-126 ; Response_reg 9-126 ; GerE 207-262 ; GerE 207-262
Cluster members and taxonomy
Representative gene: GCF_000568895#B2L_RS02185
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 685 · GCF_016648955
AssemblyASM1664895v1 · Contighaploid
Genome composition2 426 298 bp · 59,0% GCBifidobacterium breve
Signal transduction countsGenes 21 · HK 9 · RR 11CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key