1 HisKA#1
116-170 aa · 55 aa · 17.0% of protein
Raw token
HisKA:116:0.000000223:170:57:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IBE11_RS05455
Histidine kinase, Classic
Francisella tularensis subsp. novicida · GCF_016604385
ClassHKTypeClassicLength323 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_016604385#IBE11_RS05455Stable P2CS identifier used across views.
GenomeGCF_016604385Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Thiotrichales; Francisellaceae; Francisella
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length323 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage163 / 323 aa (50.5%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa323 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
215-322 aa · 108 aa · 33.4% of protein
Raw token
HATPase_c:215:7.97e-24:322:108:109- Raw architecture: HisKA:116:0.000000223:170:57:64#HATPase_c:215:7.97e-24:322:108:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_016604385::NZ_JACTTS010000018.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span20410-22120Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIBE11_05455RefSeq proteinWP_004339186.1
Context group ID
GCF_016604385::NZ_JACTTS010000018.1::G00002Context members
IBE11_RS05455IBE11_RS05460
Partner locus tags
IBE11_RS05455IBE11_RS05460
Partner old locus tags
IBE11_05455IBE11_05460
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_004339186.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIBE11_RS05455Primary locus identifier stored in the genes table.
Old locus tagIBE11_05455Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JACTTS010000018.1Sequence record reported by the local genomic context database.
Genomic interval20 410-21 381 nt972 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span20 410-22 120 ntGCF_016604385::NZ_JACTTS010000018.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016604385::NZ_JACTTS010000018.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JACTTS010000018.1All displayed genes belong to this local TCS context.
Neighborhood span20 410-22 120 nt1 711 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
20 410 nt22 120 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
IBE11_RS05455GCF_016604385#IBE11_RS05455
HKClassicCurrent focus
20 410-21 381 nt · Reverse (-)
IBE11_RS05460GCF_016604385#IBE11_RS05460
RROmpR
21 431-22 120 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154185#FTCG_RS01250Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2866071
Simplified PFAM architecture for HKOC_2866071
PFAM domain coverage: 164 / 323 aa (50.8%)
1 aa323 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[115-170] | HATPase_c[215-322]
- Domain count: 2
- Matched identifier: HKOC_2866071
- Positioned domains: HisKA 115-170 ; HATPase_c 215-322
Cluster members and taxonomy
Representative gene: GCF_000154185#FTCG_RS01250
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 264 · GCF_016604385
AssemblyASM1660438v1 · Contighaploid
Genome composition1 911 819 bp · 32,5% GCFrancisella tularensis subsp. novicida
Signal transduction countsGenes 9 · HK 4 · RR 5CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderThiotrichalesFamilyFrancisellaceaeGenusFrancisella
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Thiotrichales6Francisellaceae7Francisella
Related genes
Preview from the same derived genome key