1 Response_reg#1
179-262 aa · 84 aa · 27.4% of protein
Raw token
Response_reg:179:0.00000000000211:262:84:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IBE12_RS09270
Response regulator, unclassified
Francisella tularensis subsp. novicida · GCF_016604335
ClassRRTypeunclassifiedLength307 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_016604335#IBE12_RS09270Stable P2CS identifier used across views.
GenomeGCF_016604335Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Thiotrichales; Francisellaceae; Francisella
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length307 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage84 / 307 aa (27.4%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa307 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:179:0.00000000000211:262:84:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_016604335::NZ_JACTTR010000089.1::G00006
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span412-1335Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIBE12_09270RefSeq proteinWP_080723648.1
Context group ID
GCF_016604335::NZ_JACTTR010000089.1::G00006Context members
IBE12_RS09270
Partner locus tags
IBE12_RS09270
Partner old locus tags
IBE12_09270
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_080723648.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIBE12_RS09270Primary locus identifier stored in the genes table.
Old locus tagIBE12_09270Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JACTTR010000089.1Sequence record reported by the local genomic context database.
Genomic interval412-1 335 nt924 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span412-1 335 ntGCF_016604335::NZ_JACTTR010000089.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016604335::NZ_JACTTR010000089.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JACTTR010000089.1All displayed genes belong to this local TCS context.
Neighborhood span412-1 335 nt924 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
412 nt1 335 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
IBE12_RS09270GCF_016604335#IBE12_RS09270
RRunclassifiedCurrent focus
412-1 335 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000742085#DR83_RS00040Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_0559676
Simplified PFAM architecture for RROC_0559676
PFAM domain coverage: 82 / 307 aa (26.7%)
1 aa307 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[179-260]
- Domain count: 1
- Matched identifier: RROC_0559676
- Positioned domains: Response_reg 179-260 ; Response_reg 179-260
Cluster members and taxonomy
Representative gene: GCF_000742085#DR83_RS00040
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 264 · GCF_016604335
AssemblyASM1660433v1 · Contighaploid
Genome composition1 913 809 bp · 32,5% GCFrancisella tularensis subsp. novicida
Signal transduction countsGenes 9 · HK 4 · RR 5CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderThiotrichalesFamilyFrancisellaceaeGenusFrancisella
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Thiotrichales6Francisellaceae7Francisella
Related genes
Preview from the same derived genome key