1 Response_reg#1
3-113 aa · 111 aa · 48.7% of protein
Raw token
Response_reg:3:1.12e-32:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IBE37_RS02060
Response regulator OmpR family
Francisella tularensis · GCF_016601335
ClassRRTypeOmpRLength228 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_016601335#IBE37_RS02060Stable P2CS identifier used across views.
GenomeGCF_016601335Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Thiotrichales; Francisellaceae; Francisella
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage179 / 228 aa (78.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
152-219 aa · 68 aa · 29.8% of protein
Raw token
Trans_reg_C:152:5.52e-25:219:72:77- Raw architecture: Response_reg:3:1.12e-32:113:111:111#Trans_reg_C:152:5.52e-25:219:72:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_016601335::NZ_JACTOY010000009.1::G00001
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span12454-13140Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIBE37_02055RefSeq proteinWP_010032924.1
Context group ID
GCF_016601335::NZ_JACTOY010000009.1::G00001Context members
IBE37_RS02060
Partner locus tags
IBE37_RS02060
Partner old locus tags
IBE37_02055
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_010032924.1Primary protein accession used for annex mappings.
UniProt accessionA0AAI8BI09Primary UniProt accession resolved in the annex database.
UniProt IDA0AAI8BI09_FRATHDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIBE37_RS02060Primary locus identifier stored in the genes table.
Old locus tagIBE37_02055Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JACTOY010000009.1Sequence record reported by the local genomic context database.
Genomic interval12 454-13 140 nt687 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span12 454-13 140 ntGCF_016601335::NZ_JACTOY010000009.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016601335::NZ_JACTOY010000009.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JACTOY010000009.1All displayed genes belong to this local TCS context.
Neighborhood span12 454-13 140 nt687 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
12 454 nt13 140 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
IBE37_RS02060GCF_016601335#IBE37_RS02060
RROmpRCurrent focus
12 454-13 140 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000009245#FTL_RS02890Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1301545
Simplified PFAM architecture for RROC_1301545
PFAM domain coverage: 180 / 228 aa (78.9%)
1 aa228 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-113] | Trans_reg_C[152-220]
- Domain count: 2
- Matched identifier: RROC_1301545
- Positioned domains: Response_reg 3-113 ; Response_reg 3-113 ; Trans_reg_C 152-220 ; Trans_reg_C 152-220
Cluster members and taxonomy
Representative gene: GCF_000009245#FTL_RS02890
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 263 · GCF_016601335
AssemblyASM1660133v1 · Contighaploid
Genome composition1 795 470 bp · 32,0% GCFrancisella tularensis
Signal transduction countsGenes 2 · HK 1 · RR 1CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderThiotrichalesFamilyFrancisellaceaeGenusFrancisella
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Thiotrichales6Francisellaceae7Francisella
Related genes
Preview from the same derived genome key