1 Response_reg#1
3-128 aa · 126 aa · 96.2% of protein
Raw token
Response_reg:3:0.00000000000404:128:127:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JMF79_RS01965
Response regulator, CheY family
Coprococcus eutactus · GCF_016586415
ClassRRTypeCheYLength131 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_016586415#JMF79_RS01965Stable P2CS identifier used across views.
GenomeGCF_016586415Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length131 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage126 / 131 aa (96.2%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa131 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:3:0.00000000000404:128:127:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_016586415::NZ_BLYL01000001.1::G00003
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span454529-454924Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOEU31_03890RefSeq proteinWP_015534155.1
Context group ID
GCF_016586415::NZ_BLYL01000001.1::G00003Context members
JMF79_RS01965
Partner locus tags
JMF79_RS01965
Partner old locus tags
COEU31_03890
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_015534155.1Primary protein accession used for annex mappings.
UniProt accessionA0AAI9K2Y8Primary UniProt accession resolved in the annex database.
UniProt IDA0AAI9K2Y8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJMF79_RS01965Primary locus identifier stored in the genes table.
Old locus tagCOEU31_03890Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_BLYL01000001.1Sequence record reported by the local genomic context database.
Genomic interval454 529-454 924 nt396 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span454 529-454 924 ntGCF_016586415::NZ_BLYL01000001.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016586415::NZ_BLYL01000001.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BLYL01000001.1All displayed genes belong to this local TCS context.
Neighborhood span454 529-454 924 nt396 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
454 529 nt454 924 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
JMF79_RS01965GCF_016586415#JMF79_RS01965
RRCheYCurrent focus
454 529-454 924 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210595#CCU_RS07465Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2314546
Simplified PFAM architecture for RROC_2314546
PFAM domain coverage: 121 / 131 aa (92.4%)
1 aa131 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[3-123]
- Domain count: 1
- Matched identifier: RROC_2314546
- Positioned domains: Response_reg 3-123 ; Response_reg 3-123
Cluster members and taxonomy
Representative gene: GCF_000210595#CCU_RS07465
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 043 · GCF_016586415
AssemblyASM1658641v1 · Contighaploid
Genome composition3 247 152 bp · 43,5% GCCoprococcus eutactus
Signal transduction countsGenes 80 · HK 41 · RR 38CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key