1 Response_reg#1
5-114 aa · 110 aa · 46.4% of protein
Raw token
Response_reg:5:3.06e-38:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JDS72_RS08620
Response regulator OmpR family
Bacillus cereus · GCF_016483645
ClassRRTypeOmpRLength237 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_016483645#JDS72_RS08620Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length237 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 237 aa (78.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa237 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
155-229 aa · 75 aa · 31.6% of protein
Raw token
Trans_reg_C:155:4.69e-32:229:75:77- Raw architecture: Response_reg:5:3.06e-38:114:111:111#Trans_reg_C:155:4.69e-32:229:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_016483645::NZ_JAEHBM010000004.1::G00053
Group size33 locus tags listed below.
HK / RR2 / 1Counts resolved for the local TCS neighborhood.
Context span84100-88175Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJDS72_08610RefSeq proteinWP_002111000.1
Context group ID
GCF_016483645::NZ_JAEHBM010000004.1::G00053Context members
JDS72_RS08615JDS72_RS08620JDS72_RS08625
Partner locus tags
JDS72_RS08615JDS72_RS08620JDS72_RS08625
Partner old locus tags
JDS72_08605JDS72_08610JDS72_08615
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002111000.1Primary protein accession used for annex mappings.
UniProt accessionA0A1D3MQ15Primary UniProt accession resolved in the annex database.
UniProt IDA0A1D3MQ15_BACMYDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJDS72_RS08620Primary locus identifier stored in the genes table.
Old locus tagJDS72_08610Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAEHBM010000004.1Sequence record reported by the local genomic context database.
Genomic interval85 176-85 889 nt714 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span84 100-88 175 ntGCF_016483645::NZ_JAEHBM010000004.1::G00053
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016483645::NZ_JAEHBM010000004.1::G00053Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAEHBM010000004.1All displayed genes belong to this local TCS context.
Neighborhood span84 100-88 175 nt4 076 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
84 100 nt88 175 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
JDS72_RS08615GCF_016483645#JDS72_RS08615
HKClassic
84 100-85 179 nt · Reverse (-)
JDS72_RS08620GCF_016483645#JDS72_RS08620
RROmpRCurrent focus
85 176-85 889 nt · Reverse (-)
JDS72_RS08625GCF_016483645#JDS72_RS08625
HKClassic
86 385-88 175 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000293545#IEM_RS04835Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0962238
Simplified PFAM architecture for RROC_0962238
PFAM domain coverage: 184 / 237 aa (77.6%)
1 aa237 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[155-229]
- Domain count: 2
- Matched identifier: RROC_0962238
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 155-229 ; Trans_reg_C 155-229
Cluster members and taxonomy
Representative gene: GCF_000293545#IEM_RS04835
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 396 · GCF_016483645
AssemblyASM1648364v1 · Contighaploid
Genome composition5 620 110 bp · 35,0% GCBacillus cereus
Signal transduction countsGenes 118 · HK 64 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key