1 HAMP#1
39-109 aa · 71 aa · 19.8% of protein
Raw token
HAMP:39:0.000000000563:109:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JDS72_RS08615
Histidine kinase, Classic
Bacillus cereus · GCF_016483645
ClassHKTypeClassicLength359 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_016483645#JDS72_RS08615Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length359 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage250 / 359 aa (69.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa359 aa
Domain-by-domain annotation3 items
2 HisKA#2
120-187 aa · 68 aa · 18.9% of protein
Raw token
HisKA:120:5.55e-19:187:68:643 HATPase_c#3
238-348 aa · 111 aa · 30.9% of protein
Raw token
HATPase_c:238:2.29e-26:348:111:109- Raw architecture: HAMP:39:0.000000000563:109:71:69#HisKA:120:5.55e-19:187:68:64#HATPase_c:238:2.29e-26:348:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_016483645::NZ_JAEHBM010000004.1::G00053
Group size33 locus tags listed below.
HK / RR2 / 1Counts resolved for the local TCS neighborhood.
Context span84100-88175Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJDS72_08605RefSeq proteinWP_199692731.1
Context group ID
GCF_016483645::NZ_JAEHBM010000004.1::G00053Context members
JDS72_RS08615JDS72_RS08620JDS72_RS08625
Partner locus tags
JDS72_RS08615JDS72_RS08620JDS72_RS08625
Partner old locus tags
JDS72_08605JDS72_08610JDS72_08615
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_199692731.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJDS72_RS08615Primary locus identifier stored in the genes table.
Old locus tagJDS72_08605Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAEHBM010000004.1Sequence record reported by the local genomic context database.
Genomic interval84 100-85 179 nt1 080 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span84 100-88 175 ntGCF_016483645::NZ_JAEHBM010000004.1::G00053
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016483645::NZ_JAEHBM010000004.1::G00053Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAEHBM010000004.1All displayed genes belong to this local TCS context.
Neighborhood span84 100-88 175 nt4 076 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
84 100 nt88 175 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
JDS72_RS08615GCF_016483645#JDS72_RS08615
HKClassicCurrent focus
84 100-85 179 nt · Reverse (-)
JDS72_RS08620GCF_016483645#JDS72_RS08620
RROmpR
85 176-85 889 nt · Reverse (-)
JDS72_RS08625GCF_016483645#JDS72_RS08625
HKClassic
86 385-88 175 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_016483645#JDS72_RS08615The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2755345
Simplified PFAM architecture for HKOC_2755345
PFAM domain coverage: 178 / 359 aa (49.6%)
1 aa359 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[120-186] | HATPase_c[238-348]
- Domain count: 2
- Matched identifier: HKOC_2755345
- Positioned domains: HisKA 120-186 ; HATPase_c 238-348
Cluster members and taxonomy
Representative gene: GCF_016483645#JDS72_RS08615
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 396 · GCF_016483645
AssemblyASM1648364v1 · Contighaploid
Genome composition5 620 110 bp · 35,0% GCBacillus cereus
Signal transduction countsGenes 118 · HK 64 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key