1 Hpt#1
4-96 aa · 93 aa · 14.0% of protein
Raw token
Hpt:4:7.18e-17:96:93:84P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JDS77_RS13510
Histidine kinase, CheA
Bacillus cereus group sp. N28 · GCF_016483295
ClassHKTypeCheALength662 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_016483295#JDS77_RS13510Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HptH-kinase_dimHATPase_cCheW
Protein length662 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage426 / 662 aa (64.4%)Merged over positioned domains only.
Domain description1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheWSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa662 aa
Domain-by-domain annotation4 items
2 H-kinase_dim#2
279-338 aa · 60 aa · 9.1% of protein
Raw token
H-kinase_dim:279:0.00000000673:338:67:673 HATPase_c#3
386-525 aa · 140 aa · 21.1% of protein
Raw token
HATPase_c:386:1.03e-17:525:140:1094 CheW#4
530-662 aa · 133 aa · 20.1% of protein
Raw token
CheW:530:8.84e-22:662:139:138- Raw architecture: Hpt:4:7.18e-17:96:93:84#H-kinase_dim:279:0.00000000673:338:67:67#HATPase_c:386:1.03e-17:525:140:109#CheW:530:8.84e-22:662:139:138
- Domain description: 1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheW
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_016483295::NZ_JAEHCE010000007.1::G00065
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span231797-234282Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJDS77_13545RefSeq proteinWP_199662784.1
Context group ID
GCF_016483295::NZ_JAEHCE010000007.1::G00065Context members
JDS77_RS13505JDS77_RS13510
Partner locus tags
JDS77_RS13505JDS77_RS13510
Partner old locus tags
JDS77_13540JDS77_13545
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_199662784.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJDS77_RS13510Primary locus identifier stored in the genes table.
Old locus tagJDS77_13545Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAEHCE010000007.1Sequence record reported by the local genomic context database.
Genomic interval232 294-234 282 nt1 989 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span231 797-234 282 ntGCF_016483295::NZ_JAEHCE010000007.1::G00065
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016483295::NZ_JAEHCE010000007.1::G00065Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAEHCE010000007.1All displayed genes belong to this local TCS context.
Neighborhood span231 797-234 282 nt2 486 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
231 797 nt234 282 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JDS77_RS13505GCF_016483295#JDS77_RS13505
RRCheY
231 797-232 165 nt · Forward (+)
JDS77_RS13510GCF_016483295#JDS77_RS13510
HKCheACurrent focus
232 294-234 282 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_016483295#JDS77_RS13510The current gene is the representative for this cluster.
PFAM architectureHpt + P2 + H-kinase_dim + HATPase_c + CheW5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0868304
Simplified PFAM architecture for HKOC_0868304
PFAM domain coverage: 509 / 662 aa (76.9%)
1 aa662 aa
HptP2H-kinase_dimHATPase_cCheW
- Simplified architecture: Hpt + P2 + H-kinase_dim + HATPase_c + CheW
- Raw architecture: Hpt[4-103] | P2[148-225] | H-kinase_dim[279-337] | HATPase_c[386-525] | CheW[531-662]
- Domain count: 5
- Matched identifier: HKOC_0868304
- Positioned domains: Hpt 4-103 ; P2 148-225 ; H-kinase_dim 279-337 ; HATPase_c 386-525 ; CheW 531-662
Cluster members and taxonomy
Representative gene: GCF_016483295#JDS77_RS13510
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 794 593 · GCF_016483295
AssemblyASM1648329v1 · Contighaploid
Genome composition5 981 439 bp · 35,0% GCBacillus cereus group sp. N28
Signal transduction countsGenes 122 · HK 66 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key