1 HisKA#1
356-414 aa · 59 aa · 10.2% of protein
Raw token
HisKA:356:0.000000000443:414:59:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JDS77_RS09140
Histidine kinase, Classic
Bacillus cereus group sp. N28 · GCF_016483295
ClassHKTypeClassicLength578 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_016483295#JDS77_RS09140Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length578 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage167 / 578 aa (28.9%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa578 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
471-578 aa · 108 aa · 18.7% of protein
Raw token
HATPase_c:471:1.68e-31:578:108:109- Raw architecture: HisKA:356:0.000000000443:414:59:64#HATPase_c:471:1.68e-31:578:108:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_016483295::NZ_JAEHCE010000004.1::G00048
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span204699-207149Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJDS77_09165RefSeq proteinWP_113709046.1
Context group ID
GCF_016483295::NZ_JAEHCE010000004.1::G00048Context members
JDS77_RS09135JDS77_RS09140
Partner locus tags
JDS77_RS09135JDS77_RS09140
Partner old locus tags
JDS77_09160JDS77_09165
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_113709046.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJDS77_RS09140Primary locus identifier stored in the genes table.
Old locus tagJDS77_09165Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAEHCE010000004.1Sequence record reported by the local genomic context database.
Genomic interval205 413-207 149 nt1 737 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span204 699-207 149 ntGCF_016483295::NZ_JAEHCE010000004.1::G00048
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016483295::NZ_JAEHCE010000004.1::G00048Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAEHCE010000004.1All displayed genes belong to this local TCS context.
Neighborhood span204 699-207 149 nt2 451 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
204 699 nt207 149 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JDS77_RS09135GCF_016483295#JDS77_RS09135
RROmpR
204 699-205 403 nt · Forward (+)
JDS77_RS09140GCF_016483295#JDS77_RS09140
HKClassicCurrent focus
205 413-207 149 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003264205#B5P40_RS07640Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1173401
Simplified PFAM architecture for HKOC_1173401
PFAM domain coverage: 167 / 578 aa (28.9%)
1 aa578 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[356-414] | HATPase_c[471-578]
- Domain count: 2
- Matched identifier: HKOC_1173401
- Positioned domains: HisKA 356-414 ; HATPase_c 471-578
Cluster members and taxonomy
Representative gene: GCF_003264205#B5P40_RS07640
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 794 593 · GCF_016483295
AssemblyASM1648329v1 · Contighaploid
Genome composition5 981 439 bp · 35,0% GCBacillus cereus group sp. N28
Signal transduction countsGenes 122 · HK 66 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key