1 HAMP#1
51-129 aa · 79 aa · 22.1% of protein
Raw token
HAMP:51:0.00000000364:129:79:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JDS77_RS06615
Histidine kinase, Classic
Bacillus cereus group sp. N28 · GCF_016483295
ClassHKTypeClassicLength357 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_016483295#JDS77_RS06615Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length357 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage256 / 357 aa (71.7%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa357 aa
Domain-by-domain annotation3 items
2 HisKA#2
133-199 aa · 67 aa · 18.8% of protein
Raw token
HisKA:133:0.0000000000000307:199:67:643 HATPase_c#3
243-352 aa · 110 aa · 30.8% of protein
Raw token
HATPase_c:243:2.79e-32:352:110:109- Raw architecture: HAMP:51:0.00000000364:129:79:69#HisKA:133:0.0000000000000307:199:67:64#HATPase_c:243:2.79e-32:352:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_016483295::NZ_JAEHCE010000003.1::G00037
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span6277-8024Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJDS77_06640RefSeq proteinWP_199662605.1
Context group ID
GCF_016483295::NZ_JAEHCE010000003.1::G00037Context members
JDS77_RS06615JDS77_RS06620
Partner locus tags
JDS77_RS06615JDS77_RS06620
Partner old locus tags
JDS77_06640JDS77_06645
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_199662605.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJDS77_RS06615Primary locus identifier stored in the genes table.
Old locus tagJDS77_06640Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAEHCE010000003.1Sequence record reported by the local genomic context database.
Genomic interval6 277-7 350 nt1 074 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span6 277-8 024 ntGCF_016483295::NZ_JAEHCE010000003.1::G00037
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016483295::NZ_JAEHCE010000003.1::G00037Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAEHCE010000003.1All displayed genes belong to this local TCS context.
Neighborhood span6 277-8 024 nt1 748 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
6 277 nt8 024 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JDS77_RS06615GCF_016483295#JDS77_RS06615
HKClassicCurrent focus
6 277-7 350 nt · Reverse (-)
JDS77_RS06620GCF_016483295#JDS77_RS06620
RROmpR
7 347-8 024 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_016483295#JDS77_RS06615The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2767405
Simplified PFAM architecture for HKOC_2767405
PFAM domain coverage: 176 / 357 aa (49.3%)
1 aa357 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[133-198] | HATPase_c[244-353]
- Domain count: 2
- Matched identifier: HKOC_2767405
- Positioned domains: HisKA 133-198 ; HATPase_c 244-353
Cluster members and taxonomy
Representative gene: GCF_016483295#JDS77_RS06615
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 794 593 · GCF_016483295
AssemblyASM1648329v1 · Contighaploid
Genome composition5 981 439 bp · 35,0% GCBacillus cereus group sp. N28
Signal transduction countsGenes 122 · HK 66 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key