1 HisKA#1
134-186 aa · 53 aa · 14.7% of protein
Raw token
HisKA:134:0.0000439:186:56:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JDS77_RS00490
Histidine kinase, Classic
Bacillus cereus group sp. N28 · GCF_016483295
ClassHKTypeClassicLength360 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_016483295#JDS77_RS00490Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length360 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage164 / 360 aa (45.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
234-344 aa · 111 aa · 30.8% of protein
Raw token
HATPase_c:234:1.51e-24:344:111:109- Raw architecture: HisKA:134:0.0000439:186:56:64#HATPase_c:234:1.51e-24:344:111:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_016483295::NZ_JAEHCE010000001.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span94716-96495Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJDS77_00490RefSeq proteinWP_113935648.1
Context group ID
GCF_016483295::NZ_JAEHCE010000001.1::G00001Context members
JDS77_RS00485JDS77_RS00490
Partner locus tags
JDS77_RS00485JDS77_RS00490
Partner old locus tags
JDS77_00485JDS77_00490
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_113935648.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJDS77_RS00490Primary locus identifier stored in the genes table.
Old locus tagJDS77_00490Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAEHCE010000001.1Sequence record reported by the local genomic context database.
Genomic interval95 413-96 495 nt1 083 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span94 716-96 495 ntGCF_016483295::NZ_JAEHCE010000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016483295::NZ_JAEHCE010000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAEHCE010000001.1All displayed genes belong to this local TCS context.
Neighborhood span94 716-96 495 nt1 780 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
94 716 nt96 495 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JDS77_RS00485GCF_016483295#JDS77_RS00485
RROmpR
94 716-95 423 nt · Forward (+)
JDS77_RS00490GCF_016483295#JDS77_RS00490
HKClassicCurrent focus
95 413-96 495 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003315125#DET63_RS01315Use this link to inspect the representative gene detail.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2748501
Simplified PFAM architecture for HKOC_2748501
PFAM domain coverage: 112 / 360 aa (31.1%)
1 aa360 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[234-345]
- Domain count: 1
- Matched identifier: HKOC_2748501
- Positioned domains: HATPase_c 234-345
Cluster members and taxonomy
Representative gene: GCF_003315125#DET63_RS01315
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 794 593 · GCF_016483295
AssemblyASM1648329v1 · Contighaploid
Genome composition5 981 439 bp · 35,0% GCBacillus cereus group sp. N28
Signal transduction countsGenes 122 · HK 66 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key