1 HAMP#1
39-109 aa · 71 aa · 20.2% of protein
Raw token
HAMP:39:0.00000000209:109:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JDS94_RS26855
Histidine kinase, Classic
Bacillus cereus · GCF_016483265
ClassHKTypeClassicLength352 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_016483265#JDS94_RS26855Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length352 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage250 / 352 aa (71.0%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa352 aa
Domain-by-domain annotation3 items
2 HisKA#2
120-187 aa · 68 aa · 19.3% of protein
Raw token
HisKA:120:1.1e-17:187:68:643 HATPase_c#3
238-348 aa · 111 aa · 31.5% of protein
Raw token
HATPase_c:238:8.72e-26:348:111:109- Raw architecture: HAMP:39:0.00000000209:109:71:69#HisKA:120:1.1e-17:187:68:64#HATPase_c:238:8.72e-26:348:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_016483265::NZ_JAEHCG010000055.1::G00054
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span8424-9482Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJDS94_26860RefSeq proteinWP_199710487.1
Context group ID
GCF_016483265::NZ_JAEHCG010000055.1::G00054Context members
JDS94_RS26855
Partner locus tags
JDS94_RS26855
Partner old locus tags
JDS94_26860
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_199710487.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJDS94_RS26855Primary locus identifier stored in the genes table.
Old locus tagJDS94_26860Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAEHCG010000055.1Sequence record reported by the local genomic context database.
Genomic interval8 424-9 482 nt1 059 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span8 424-9 482 ntGCF_016483265::NZ_JAEHCG010000055.1::G00054
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016483265::NZ_JAEHCG010000055.1::G00054Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAEHCG010000055.1All displayed genes belong to this local TCS context.
Neighborhood span8 424-9 482 nt1 059 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
8 424 nt9 482 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
JDS94_RS26855GCF_016483265#JDS94_RS26855
HKClassicCurrent focus
8 424-9 482 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_016483265#JDS94_RS26855The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2790506
Simplified PFAM architecture for HKOC_2790506
PFAM domain coverage: 231 / 352 aa (65.6%)
1 aa352 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[57-109] | HisKA[120-186] | HATPase_c[238-348]
- Domain count: 3
- Matched identifier: HKOC_2790506
- Positioned domains: HAMP 57-109 ; HisKA 120-186 ; HATPase_c 238-348
Cluster members and taxonomy
Representative gene: GCF_016483265#JDS94_RS26855
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 396 · GCF_016483265
AssemblyASM1648326v1 · Contighaploid
Genome composition5 698 396 bp · 35,5% GCBacillus cereus
Signal transduction countsGenes 112 · HK 61 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key