1 HAMP#1
164-233 aa · 70 aa · 14.3% of protein
Raw token
HAMP:164:0.00000000000000143:233:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JDS94_RS17680
Histidine kinase, Classic
Bacillus cereus · GCF_016483265
ClassHKTypeClassicLength490 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_016483265#JDS94_RS17680Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length490 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage232 / 490 aa (47.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa490 aa
Domain-by-domain annotation3 items
2 HisKA#2
258-323 aa · 66 aa · 13.5% of protein
Raw token
HisKA:258:0.0000000000000277:323:66:643 HATPase_c#3
374-469 aa · 96 aa · 19.6% of protein
Raw token
HATPase_c:374:0.00000000000000116:469:96:109- Raw architecture: HAMP:164:0.00000000000000143:233:70:69#HisKA:258:0.0000000000000277:323:66:64#HATPase_c:374:0.00000000000000116:469:96:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_016483265::NZ_JAEHCG010000017.1::G00027
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span89240-91370Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJDS94_17685RefSeq proteinWP_078173666.1
Context group ID
GCF_016483265::NZ_JAEHCG010000017.1::G00027Context members
JDS94_RS17675JDS94_RS17680
Partner locus tags
JDS94_RS17675JDS94_RS17680
Partner old locus tags
JDS94_17680JDS94_17685
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_078173666.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJDS94_RS17680Primary locus identifier stored in the genes table.
Old locus tagJDS94_17685Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAEHCG010000017.1Sequence record reported by the local genomic context database.
Genomic interval89 898-91 370 nt1 473 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span89 240-91 370 ntGCF_016483265::NZ_JAEHCG010000017.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016483265::NZ_JAEHCG010000017.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAEHCG010000017.1All displayed genes belong to this local TCS context.
Neighborhood span89 240-91 370 nt2 131 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
89 240 nt91 370 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JDS94_RS17675GCF_016483265#JDS94_RS17675
RROmpR
89 240-89 905 nt · Forward (+)
JDS94_RS17680GCF_016483265#JDS94_RS17680
HKClassicCurrent focus
89 898-91 370 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002014485#BW898_RS11795Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1534781
Simplified PFAM architecture for HKOC_1534781
PFAM domain coverage: 215 / 490 aa (43.9%)
1 aa490 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[181-233] | HisKA[259-323] | HATPase_c[373-469]
- Domain count: 3
- Matched identifier: HKOC_1534781
- Positioned domains: HAMP 181-233 ; HisKA 259-323 ; HATPase_c 373-469
Cluster members and taxonomy
Representative gene: GCF_002014485#BW898_RS11795
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 396 · GCF_016483265
AssemblyASM1648326v1 · Contighaploid
Genome composition5 698 396 bp · 35,5% GCBacillus cereus
Signal transduction countsGenes 112 · HK 61 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key