1 HisKA#1
221-285 aa · 65 aa · 14.8% of protein
Raw token
HisKA:221:1.53e-16:285:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JDS94_RS17355
Histidine kinase, Classic
Bacillus cereus · GCF_016483265
ClassHKTypeClassicLength439 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_016483265#JDS94_RS17355Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length439 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 439 aa (38.5%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa439 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
325-428 aa · 104 aa · 23.7% of protein
Raw token
HATPase_c:325:8.67e-24:428:107:109- Raw architecture: HisKA:221:1.53e-16:285:65:64#HATPase_c:325:8.67e-24:428:107:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_016483265::NZ_JAEHCG010000017.1::G00026
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span30180-31499Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJDS94_17360RefSeq proteinWP_078173628.1
Context group ID
GCF_016483265::NZ_JAEHCG010000017.1::G00026Context members
JDS94_RS17355
Partner locus tags
JDS94_RS17355
Partner old locus tags
JDS94_17360
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_078173628.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJDS94_RS17355Primary locus identifier stored in the genes table.
Old locus tagJDS94_17360Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAEHCG010000017.1Sequence record reported by the local genomic context database.
Genomic interval30 180-31 499 nt1 320 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span30 180-31 499 ntGCF_016483265::NZ_JAEHCG010000017.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016483265::NZ_JAEHCG010000017.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAEHCG010000017.1All displayed genes belong to this local TCS context.
Neighborhood span30 180-31 499 nt1 320 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
30 180 nt31 499 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
JDS94_RS17355GCF_016483265#JDS94_RS17355
HKClassicCurrent focus
30 180-31 499 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002014485#BW898_RS11480Use this link to inspect the representative gene detail.
PFAM architecture5TM-5TMR_LYT + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2083910
Simplified PFAM architecture for HKOC_2083910
PFAM domain coverage: 324 / 439 aa (73.8%)
1 aa439 aa
5TM-5TMR_LYTHisKAHATPase_c
- Simplified architecture: 5TM-5TMR_LYT + HisKA + HATPase_c
- Raw architecture: 5TM-5TMR_LYT[38-194] | HisKA[221-283] | HATPase_c[326-429]
- Domain count: 3
- Matched identifier: HKOC_2083910
- Positioned domains: 5TM-5TMR_LYT 38-194 ; HisKA 221-283 ; HATPase_c 326-429
Cluster members and taxonomy
Representative gene: GCF_002014485#BW898_RS11480
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 396 · GCF_016483265
AssemblyASM1648326v1 · Contighaploid
Genome composition5 698 396 bp · 35,5% GCBacillus cereus
Signal transduction countsGenes 112 · HK 61 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key