1 Response_reg#1
5-108 aa · 104 aa · 43.7% of protein
Raw token
Response_reg:5:0.000000000000607:108:106:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JDS94_RS14620
Response regulator LytTR family
Bacillus cereus · GCF_016483265
ClassRRTypeLytTRLength238 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_016483265#JDS94_RS14620Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length238 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage206 / 238 aa (86.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa238 aa
Domain-by-domain annotation2 items
2 LytTR#2
136-237 aa · 102 aa · 42.9% of protein
Raw token
LytTR:136:5.97e-30:237:102:98- Raw architecture: Response_reg:5:0.000000000000607:108:106:111#LytTR:136:5.97e-30:237:102:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_016483265::NZ_JAEHCG010000012.1::G00018
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span85976-86692Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJDS94_14625RefSeq proteinWP_016106763.1
Context group ID
GCF_016483265::NZ_JAEHCG010000012.1::G00018Context members
JDS94_RS14620
Partner locus tags
JDS94_RS14620
Partner old locus tags
JDS94_14625
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_016106763.1Primary protein accession used for annex mappings.
UniProt accessionA0A1G4EZE2Primary UniProt accession resolved in the annex database.
UniProt IDA0A1G4EZE2_BACMYDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJDS94_RS14620Primary locus identifier stored in the genes table.
Old locus tagJDS94_14625Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAEHCG010000012.1Sequence record reported by the local genomic context database.
Genomic interval85 976-86 692 nt717 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span85 976-86 692 ntGCF_016483265::NZ_JAEHCG010000012.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016483265::NZ_JAEHCG010000012.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAEHCG010000012.1All displayed genes belong to this local TCS context.
Neighborhood span85 976-86 692 nt717 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
85 976 nt86 692 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
JDS94_RS14620GCF_016483265#JDS94_RS14620
RRLytTRCurrent focus
85 976-86 692 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000399525#IIQ_RS27950Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0933903
Simplified PFAM architecture for RROC_0933903
PFAM domain coverage: 204 / 238 aa (85.7%)
1 aa238 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[5-109] | LytTR[138-236]
- Domain count: 2
- Matched identifier: RROC_0933903
- Positioned domains: Response_reg 5-109 ; Response_reg 5-109 ; LytTR 138-236 ; LytTR 138-236
Cluster members and taxonomy
Representative gene: GCF_000399525#IIQ_RS27950
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 396 · GCF_016483265
AssemblyASM1648326v1 · Contighaploid
Genome composition5 698 396 bp · 35,5% GCBacillus cereus
Signal transduction countsGenes 112 · HK 61 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key