1 HAMP#1
39-109 aa · 71 aa · 19.8% of protein
Raw token
HAMP:39:0.00000000063:109:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JDS94_RS14150
Histidine kinase, Classic
Bacillus cereus · GCF_016483265
ClassHKTypeClassicLength359 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_016483265#JDS94_RS14150Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length359 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage250 / 359 aa (69.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa359 aa
Domain-by-domain annotation3 items
2 HisKA#2
120-187 aa · 68 aa · 18.9% of protein
Raw token
HisKA:120:7.97e-19:187:68:643 HATPase_c#3
238-348 aa · 111 aa · 30.9% of protein
Raw token
HATPase_c:238:1.01e-26:348:111:109- Raw architecture: HAMP:39:0.00000000063:109:71:69#HisKA:120:7.97e-19:187:68:64#HATPase_c:238:1.01e-26:348:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_016483265::NZ_JAEHCG010000011.1::G00015
Group size33 locus tags listed below.
HK / RR2 / 1Counts resolved for the local TCS neighborhood.
Context span123611-127686Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJDS94_14155RefSeq proteinWP_088059485.1
Context group ID
GCF_016483265::NZ_JAEHCG010000011.1::G00015Context members
JDS94_RS14140JDS94_RS14145JDS94_RS14150
Partner locus tags
JDS94_RS14140JDS94_RS14145JDS94_RS14150
Partner old locus tags
JDS94_14145JDS94_14150JDS94_14155
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_088059485.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJDS94_RS14150Primary locus identifier stored in the genes table.
Old locus tagJDS94_14155Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAEHCG010000011.1Sequence record reported by the local genomic context database.
Genomic interval126 607-127 686 nt1 080 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span123 611-127 686 ntGCF_016483265::NZ_JAEHCG010000011.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016483265::NZ_JAEHCG010000011.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAEHCG010000011.1All displayed genes belong to this local TCS context.
Neighborhood span123 611-127 686 nt4 076 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
123 611 nt127 686 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
JDS94_RS14140GCF_016483265#JDS94_RS14140
HKClassic
123 611-125 401 nt · Forward (+)
JDS94_RS14145GCF_016483265#JDS94_RS14145
RROmpR
125 897-126 610 nt · Forward (+)
JDS94_RS14150GCF_016483265#JDS94_RS14150
HKClassicCurrent focus
126 607-127 686 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004330435#E0M25_RS09270Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2754528
Simplified PFAM architecture for HKOC_2754528
PFAM domain coverage: 178 / 359 aa (49.6%)
1 aa359 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[120-186] | HATPase_c[238-348]
- Domain count: 2
- Matched identifier: HKOC_2754528
- Positioned domains: HisKA 120-186 ; HATPase_c 238-348
Cluster members and taxonomy
Representative gene: GCF_004330435#E0M25_RS09270
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 396 · GCF_016483265
AssemblyASM1648326v1 · Contighaploid
Genome composition5 698 396 bp · 35,5% GCBacillus cereus
Signal transduction countsGenes 112 · HK 61 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key