1 HAMP#1
161-229 aa · 69 aa · 15.1% of protein
Raw token
HAMP:161:0.00000000000000494:229:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JDS94_RS12565
Histidine kinase, Classic
Bacillus cereus · GCF_016483265
ClassHKTypeClassicLength456 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_016483265#JDS94_RS12565Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length456 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage244 / 456 aa (53.5%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa456 aa
Domain-by-domain annotation3 items
2 HisKA#2
234-299 aa · 66 aa · 14.5% of protein
Raw token
HisKA:234:0.0000000000000147:299:66:643 HATPase_c#3
346-454 aa · 109 aa · 23.9% of protein
Raw token
HATPase_c:346:1.7e-36:454:109:109- Raw architecture: HAMP:161:0.00000000000000494:229:69:69#HisKA:234:0.0000000000000147:299:66:64#HATPase_c:346:1.7e-36:454:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_016483265::NZ_JAEHCG010000009.1::G00068
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span92173-94232Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJDS94_12565RefSeq proteinWP_078173831.1
Context group ID
GCF_016483265::NZ_JAEHCG010000009.1::G00068Context members
JDS94_RS12565JDS94_RS12570
Partner locus tags
JDS94_RS12565JDS94_RS12570
Partner old locus tags
JDS94_12565JDS94_12570
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_078173831.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJDS94_RS12565Primary locus identifier stored in the genes table.
Old locus tagJDS94_12565Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAEHCG010000009.1Sequence record reported by the local genomic context database.
Genomic interval92 173-93 543 nt1 371 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span92 173-94 232 ntGCF_016483265::NZ_JAEHCG010000009.1::G00068
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016483265::NZ_JAEHCG010000009.1::G00068Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAEHCG010000009.1All displayed genes belong to this local TCS context.
Neighborhood span92 173-94 232 nt2 060 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
92 173 nt94 232 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JDS94_RS12565GCF_016483265#JDS94_RS12565
HKClassicCurrent focus
92 173-93 543 nt · Reverse (-)
JDS94_RS12570GCF_016483265#JDS94_RS12570
RROmpR
93 555-94 232 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002014485#BW898_RS13250Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1889744
Simplified PFAM architecture for HKOC_1889744
PFAM domain coverage: 226 / 456 aa (49.6%)
1 aa456 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[178-229] | HisKA[235-299] | HATPase_c[346-454]
- Domain count: 3
- Matched identifier: HKOC_1889744
- Positioned domains: HAMP 178-229 ; HisKA 235-299 ; HATPase_c 346-454
Cluster members and taxonomy
Representative gene: GCF_002014485#BW898_RS13250
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 396 · GCF_016483265
AssemblyASM1648326v1 · Contighaploid
Genome composition5 698 396 bp · 35,5% GCBacillus cereus
Signal transduction countsGenes 112 · HK 61 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key