1 HAMP#1
189-256 aa · 68 aa · 14.0% of protein
Raw token
HAMP:189:0.0000000000359:256:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JDS94_RS12250
Histidine kinase, Classic
Bacillus cereus · GCF_016483265
ClassHKTypeClassicLength484 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_016483265#JDS94_RS12250Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length484 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage245 / 484 aa (50.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa484 aa
Domain-by-domain annotation3 items
2 HisKA#2
262-327 aa · 66 aa · 13.6% of protein
Raw token
HisKA:262:0.0000000000000719:327:66:643 HATPase_c#3
374-484 aa · 111 aa · 22.9% of protein
Raw token
HATPase_c:374:1.36e-33:484:111:109- Raw architecture: HAMP:189:0.0000000000359:256:70:69#HisKA:262:0.0000000000000719:327:66:64#HATPase_c:374:1.36e-33:484:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_016483265::NZ_JAEHCG010000009.1::G00067
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span21049-23240Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJDS94_12250RefSeq proteinWP_199709480.1
Context group ID
GCF_016483265::NZ_JAEHCG010000009.1::G00067Context members
JDS94_RS12250JDS94_RS12255
Partner locus tags
JDS94_RS12250JDS94_RS12255
Partner old locus tags
JDS94_12250JDS94_12255
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_199709480.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJDS94_RS12250Primary locus identifier stored in the genes table.
Old locus tagJDS94_12250Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAEHCG010000009.1Sequence record reported by the local genomic context database.
Genomic interval21 049-22 503 nt1 455 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span21 049-23 240 ntGCF_016483265::NZ_JAEHCG010000009.1::G00067
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016483265::NZ_JAEHCG010000009.1::G00067Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAEHCG010000009.1All displayed genes belong to this local TCS context.
Neighborhood span21 049-23 240 nt2 192 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
21 049 nt23 240 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JDS94_RS12250GCF_016483265#JDS94_RS12250
HKClassicCurrent focus
21 049-22 503 nt · Reverse (-)
JDS94_RS12255GCF_016483265#JDS94_RS12255
RROmpR
22 569-23 240 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_016483265#JDS94_RS12250The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1588371
Simplified PFAM architecture for HKOC_1588371
PFAM domain coverage: 225 / 484 aa (46.5%)
1 aa484 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[207-256] | HisKA[263-327] | HATPase_c[374-483]
- Domain count: 3
- Matched identifier: HKOC_1588371
- Positioned domains: HAMP 207-256 ; HisKA 263-327 ; HATPase_c 374-483
Cluster members and taxonomy
Representative gene: GCF_016483265#JDS94_RS12250
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 396 · GCF_016483265
AssemblyASM1648326v1 · Contighaploid
Genome composition5 698 396 bp · 35,5% GCBacillus cereus
Signal transduction countsGenes 112 · HK 61 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key