1 HisKA#1
186-253 aa · 68 aa · 16.5% of protein
Raw token
HisKA:186:0.000000000000031:253:68:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JDS94_RS12190
Histidine kinase, Classic
Bacillus cereus · GCF_016483265
ClassHKTypeClassicLength411 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_016483265#JDS94_RS12190Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length411 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage180 / 411 aa (43.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa411 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
298-409 aa · 112 aa · 27.3% of protein
Raw token
HATPase_c:298:5.56e-29:409:112:109- Raw architecture: HisKA:186:0.000000000000031:253:68:64#HATPase_c:298:5.56e-29:409:112:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_016483265::NZ_JAEHCG010000009.1::G00065
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span5615-7533Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJDS94_12190RefSeq proteinWP_078173882.1
Context group ID
GCF_016483265::NZ_JAEHCG010000009.1::G00065Context members
JDS94_RS12185JDS94_RS12190
Partner locus tags
JDS94_RS12185JDS94_RS12190
Partner old locus tags
JDS94_12185JDS94_12190
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_078173882.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJDS94_RS12190Primary locus identifier stored in the genes table.
Old locus tagJDS94_12190Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAEHCG010000009.1Sequence record reported by the local genomic context database.
Genomic interval6 298-7 533 nt1 236 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span5 615-7 533 ntGCF_016483265::NZ_JAEHCG010000009.1::G00065
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016483265::NZ_JAEHCG010000009.1::G00065Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAEHCG010000009.1All displayed genes belong to this local TCS context.
Neighborhood span5 615-7 533 nt1 919 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
5 615 nt7 533 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JDS94_RS12185GCF_016483265#JDS94_RS12185
RROmpR
5 615-6 286 nt · Forward (+)
JDS94_RS12190GCF_016483265#JDS94_RS12190
HKClassicCurrent focus
6 298-7 533 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002014485#BW898_RS13640Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2346354
Simplified PFAM architecture for HKOC_2346354
PFAM domain coverage: 177 / 411 aa (43.1%)
1 aa411 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[187-252] | HATPase_c[298-408]
- Domain count: 2
- Matched identifier: HKOC_2346354
- Positioned domains: HisKA 187-252 ; HATPase_c 298-408
Cluster members and taxonomy
Representative gene: GCF_002014485#BW898_RS13640
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 396 · GCF_016483265
AssemblyASM1648326v1 · Contighaploid
Genome composition5 698 396 bp · 35,5% GCBacillus cereus
Signal transduction countsGenes 112 · HK 61 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key