1 HAMP#1
51-129 aa · 79 aa · 22.1% of protein
Raw token
HAMP:51:0.0000000047:129:79:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JDS94_RS06760
Histidine kinase, Classic
Bacillus cereus · GCF_016483265
ClassHKTypeClassicLength357 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_016483265#JDS94_RS06760Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length357 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage255 / 357 aa (71.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa357 aa
Domain-by-domain annotation3 items
2 HisKA#2
134-199 aa · 66 aa · 18.5% of protein
Raw token
HisKA:134:0.000000000000121:199:66:643 HATPase_c#3
243-352 aa · 110 aa · 30.8% of protein
Raw token
HATPase_c:243:1.89e-31:352:110:109- Raw architecture: HAMP:51:0.0000000047:129:79:69#HisKA:134:0.000000000000121:199:66:64#HATPase_c:243:1.89e-31:352:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_016483265::NZ_JAEHCG010000003.1::G00040
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span174905-176652Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJDS94_06760RefSeq proteinWP_078180890.1
Context group ID
GCF_016483265::NZ_JAEHCG010000003.1::G00040Context members
JDS94_RS06755JDS94_RS06760
Partner locus tags
JDS94_RS06755JDS94_RS06760
Partner old locus tags
JDS94_06755JDS94_06760
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_078180890.1Primary protein accession used for annex mappings.
UniProt accessionA0A1S9UPM6Primary UniProt accession resolved in the annex database.
UniProt IDA0A1S9UPM6_BACCEDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJDS94_RS06760Primary locus identifier stored in the genes table.
Old locus tagJDS94_06760Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAEHCG010000003.1Sequence record reported by the local genomic context database.
Genomic interval175 579-176 652 nt1 074 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span174 905-176 652 ntGCF_016483265::NZ_JAEHCG010000003.1::G00040
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016483265::NZ_JAEHCG010000003.1::G00040Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAEHCG010000003.1All displayed genes belong to this local TCS context.
Neighborhood span174 905-176 652 nt1 748 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
174 905 nt176 652 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JDS94_RS06755GCF_016483265#JDS94_RS06755
RROmpR
174 905-175 582 nt · Forward (+)
JDS94_RS06760GCF_016483265#JDS94_RS06760
HKClassicCurrent focus
175 579-176 652 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002014575#BW892_RS15075Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2765971
Simplified PFAM architecture for HKOC_2765971
PFAM domain coverage: 175 / 357 aa (49.0%)
1 aa357 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[134-198] | HATPase_c[244-353]
- Domain count: 2
- Matched identifier: HKOC_2765971
- Positioned domains: HisKA 134-198 ; HATPase_c 244-353
Cluster members and taxonomy
Representative gene: GCF_002014575#BW892_RS15075
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 396 · GCF_016483265
AssemblyASM1648326v1 · Contighaploid
Genome composition5 698 396 bp · 35,5% GCBacillus cereus
Signal transduction countsGenes 112 · HK 61 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key