1 Response_reg#1
4-113 aa · 110 aa · 47.6% of protein
Raw token
Response_reg:4:4.01e-28:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JDS94_RS04345
Response regulator OmpR family
Bacillus cereus · GCF_016483265
ClassRRTypeOmpRLength231 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_016483265#JDS94_RS04345Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length231 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 231 aa (80.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa231 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-225 aa · 75 aa · 32.5% of protein
Raw token
Trans_reg_C:151:5.94e-25:225:76:77- Raw architecture: Response_reg:4:4.01e-28:113:111:111#Trans_reg_C:151:5.94e-25:225:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_016483265::NZ_JAEHCG010000001.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span805425-807145Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJDS94_04345RefSeq proteinWP_002034497.1
Context group ID
GCF_016483265::NZ_JAEHCG010000001.1::G00011Context members
JDS94_RS04345JDS94_RS04350
Partner locus tags
JDS94_RS04345JDS94_RS04350
Partner old locus tags
JDS94_04345JDS94_04350
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002034497.1Primary protein accession used for annex mappings.
UniProt accessionJ8ES52Primary UniProt accession resolved in the annex database.
UniProt IDJ8ES52_BACCEDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJDS94_RS04345Primary locus identifier stored in the genes table.
Old locus tagJDS94_04345Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAEHCG010000001.1Sequence record reported by the local genomic context database.
Genomic interval805 425-806 120 nt696 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span805 425-807 145 ntGCF_016483265::NZ_JAEHCG010000001.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016483265::NZ_JAEHCG010000001.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAEHCG010000001.1All displayed genes belong to this local TCS context.
Neighborhood span805 425-807 145 nt1 721 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
805 425 nt807 145 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JDS94_RS04345GCF_016483265#JDS94_RS04345
RROmpRCurrent focus
805 425-806 120 nt · Forward (+)
JDS94_RS04350GCF_016483265#JDS94_RS04350
HKClassic
806 123-807 145 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000018825#BCERKBAB4_RS23390Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1157886
Simplified PFAM architecture for RROC_1157886
PFAM domain coverage: 184 / 231 aa (79.7%)
1 aa231 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[151-225]
- Domain count: 2
- Matched identifier: RROC_1157886
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 151-225 ; Trans_reg_C 151-225
Cluster members and taxonomy
Representative gene: GCF_000018825#BCERKBAB4_RS23390
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 396 · GCF_016483265
AssemblyASM1648326v1 · Contighaploid
Genome composition5 698 396 bp · 35,5% GCBacillus cereus
Signal transduction countsGenes 112 · HK 61 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key