1 Response_reg#1
5-113 aa · 109 aa · 47.4% of protein
Raw token
Response_reg:5:1.35e-20:113:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JDS93_RS25330
Response regulator OmpR family
Bacillus cereus group sp. N34 · GCF_016483175
ClassRRTypeOmpRLength230 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_016483175#JDS93_RS25330Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length230 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 230 aa (80.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa230 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
150-225 aa · 76 aa · 33.0% of protein
Raw token
Trans_reg_C:150:1.29e-24:225:77:77- Raw architecture: Response_reg:5:1.35e-20:113:110:111#Trans_reg_C:150:1.29e-24:225:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_016483175::NZ_JAEHCJ010000022.1::G00040
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span9710-11394Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJDS93_25305RefSeq proteinWP_199627523.1
Context group ID
GCF_016483175::NZ_JAEHCJ010000022.1::G00040Context members
JDS93_RS25325JDS93_RS25330
Partner locus tags
JDS93_RS25325JDS93_RS25330
Partner old locus tags
JDS93_25300JDS93_25305
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_199627523.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJDS93_RS25330Primary locus identifier stored in the genes table.
Old locus tagJDS93_25305Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAEHCJ010000022.1Sequence record reported by the local genomic context database.
Genomic interval10 702-11 394 nt693 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span9 710-11 394 ntGCF_016483175::NZ_JAEHCJ010000022.1::G00040
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016483175::NZ_JAEHCJ010000022.1::G00040Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAEHCJ010000022.1All displayed genes belong to this local TCS context.
Neighborhood span9 710-11 394 nt1 685 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
9 710 nt11 394 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JDS93_RS25325GCF_016483175#JDS93_RS25325
HKClassic
9 710-10 705 nt · Reverse (-)
JDS93_RS25330GCF_016483175#JDS93_RS25330
RROmpRCurrent focus
10 702-11 394 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_016483175#JDS93_RS25330The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1219799
Simplified PFAM architecture for RROC_1219799
PFAM domain coverage: 183 / 230 aa (79.6%)
1 aa230 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-112] | Trans_reg_C[151-225]
- Domain count: 2
- Matched identifier: RROC_1219799
- Positioned domains: Response_reg 5-112 ; Trans_reg_C 151-225
Cluster members and taxonomy
Representative gene: GCF_016483175#JDS93_RS25330
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 794 595 · GCF_016483175
AssemblyASM1648317v1 · Contighaploid
Genome composition5 631 503 bp · 35,5% GCBacillus cereus group sp. N34
Signal transduction countsGenes 133 · HK 70 · RR 62CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key