1 Response_reg#1
5-114 aa · 110 aa · 48.2% of protein
Raw token
Response_reg:5:1.11e-40:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JDS93_RS21245
Response regulator OmpR family
Bacillus cereus group sp. N34 · GCF_016483175
ClassRRTypeOmpRLength228 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_016483175#JDS93_RS21245Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 228 aa (82.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa228 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
152-228 aa · 77 aa · 33.8% of protein
Raw token
Trans_reg_C:152:1.54e-34:228:77:77- Raw architecture: Response_reg:5:1.11e-40:114:111:111#Trans_reg_C:152:1.54e-34:228:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_016483175::NZ_JAEHCJ010000013.1::G00019
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span164282-166041Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJDS93_21220RefSeq proteinWP_199627370.1
Context group ID
GCF_016483175::NZ_JAEHCJ010000013.1::G00019Context members
JDS93_RS21245JDS93_RS21250
Partner locus tags
JDS93_RS21245JDS93_RS21250
Partner old locus tags
JDS93_21220JDS93_21225
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_199627370.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJDS93_RS21245Primary locus identifier stored in the genes table.
Old locus tagJDS93_21220Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAEHCJ010000013.1Sequence record reported by the local genomic context database.
Genomic interval164 282-164 968 nt687 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span164 282-166 041 ntGCF_016483175::NZ_JAEHCJ010000013.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016483175::NZ_JAEHCJ010000013.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAEHCJ010000013.1All displayed genes belong to this local TCS context.
Neighborhood span164 282-166 041 nt1 760 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
164 282 nt166 041 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JDS93_RS21245GCF_016483175#JDS93_RS21245
RROmpRCurrent focus
164 282-164 968 nt · Forward (+)
JDS93_RS21250GCF_016483175#JDS93_RS21250
HKClassic
164 965-166 041 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_016483175#JDS93_RS21245The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1324420
Simplified PFAM architecture for RROC_1324420
PFAM domain coverage: 186 / 228 aa (81.6%)
1 aa228 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-114] | Trans_reg_C[152-227]
- Domain count: 2
- Matched identifier: RROC_1324420
- Positioned domains: Response_reg 5-114 ; Trans_reg_C 152-227
Cluster members and taxonomy
Representative gene: GCF_016483175#JDS93_RS21245
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 794 595 · GCF_016483175
AssemblyASM1648317v1 · Contighaploid
Genome composition5 631 503 bp · 35,5% GCBacillus cereus group sp. N34
Signal transduction countsGenes 133 · HK 70 · RR 62CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key