1 Response_reg#1
4-113 aa · 110 aa · 49.1% of protein
Raw token
Response_reg:4:2.48e-32:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JDS93_RS18305
Response regulator OmpR family
Bacillus cereus group sp. N34 · GCF_016483175
ClassRRTypeOmpRLength224 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_016483175#JDS93_RS18305Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length224 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 224 aa (83.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa224 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-223 aa · 76 aa · 33.9% of protein
Raw token
Trans_reg_C:148:9.4e-31:223:77:77- Raw architecture: Response_reg:4:2.48e-32:113:111:111#Trans_reg_C:148:9.4e-31:223:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_016483175::NZ_JAEHCJ010000010.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span201444-203533Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJDS93_18285RefSeq proteinWP_199627198.1
Context group ID
GCF_016483175::NZ_JAEHCJ010000010.1::G00006Context members
JDS93_RS18300JDS93_RS18305
Partner locus tags
JDS93_RS18300JDS93_RS18305
Partner old locus tags
JDS93_18280JDS93_18285
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_199627198.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJDS93_RS18305Primary locus identifier stored in the genes table.
Old locus tagJDS93_18285Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAEHCJ010000010.1Sequence record reported by the local genomic context database.
Genomic interval202 859-203 533 nt675 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span201 444-203 533 ntGCF_016483175::NZ_JAEHCJ010000010.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016483175::NZ_JAEHCJ010000010.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAEHCJ010000010.1All displayed genes belong to this local TCS context.
Neighborhood span201 444-203 533 nt2 090 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
201 444 nt203 533 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JDS93_RS18300GCF_016483175#JDS93_RS18300
HKClassic
201 444-202 862 nt · Reverse (-)
JDS93_RS18305GCF_016483175#JDS93_RS18305
RROmpRCurrent focus
202 859-203 533 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_016483175#JDS93_RS18305The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1553955
Simplified PFAM architecture for RROC_1553955
PFAM domain coverage: 183 / 224 aa (81.7%)
1 aa224 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[149-222]
- Domain count: 2
- Matched identifier: RROC_1553955
- Positioned domains: Response_reg 4-112 ; Trans_reg_C 149-222
Cluster members and taxonomy
Representative gene: GCF_016483175#JDS93_RS18305
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 794 595 · GCF_016483175
AssemblyASM1648317v1 · Contighaploid
Genome composition5 631 503 bp · 35,5% GCBacillus cereus group sp. N34
Signal transduction countsGenes 133 · HK 70 · RR 62CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key