1 HAMP#1
311-378 aa · 68 aa · 11.0% of protein
Raw token
HAMP:311:0.0000000000000394:378:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JDS93_RS14050
Histidine kinase, Classic
Bacillus cereus group sp. N34 · GCF_016483175
ClassHKTypeClassicLength617 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_016483175#JDS93_RS14050Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length617 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage244 / 617 aa (39.5%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa617 aa
Domain-by-domain annotation3 items
2 HisKA#2
398-462 aa · 65 aa · 10.5% of protein
Raw token
HisKA:398:0.0000000000000637:462:65:643 HATPase_c#3
506-616 aa · 111 aa · 18.0% of protein
Raw token
HATPase_c:506:1.82e-22:616:112:109- Raw architecture: HAMP:311:0.0000000000000394:378:68:69#HisKA:398:0.0000000000000637:462:65:64#HATPase_c:506:1.82e-22:616:112:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_016483175::NZ_JAEHCJ010000007.1::G00073
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span72417-74956Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJDS93_14035RefSeq proteinWP_002129600.1
Context group ID
GCF_016483175::NZ_JAEHCJ010000007.1::G00073Context members
JDS93_RS14045JDS93_RS14050
Partner locus tags
JDS93_RS14045JDS93_RS14050
Partner old locus tags
JDS93_14030JDS93_14035
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002129600.1Primary protein accession used for annex mappings.
UniProt accessionA0ABC9RAP9Primary UniProt accession resolved in the annex database.
UniProt IDA0ABC9RAP9_BACMYDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJDS93_RS14050Primary locus identifier stored in the genes table.
Old locus tagJDS93_14035Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAEHCJ010000007.1Sequence record reported by the local genomic context database.
Genomic interval73 103-74 956 nt1 854 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span72 417-74 956 ntGCF_016483175::NZ_JAEHCJ010000007.1::G00073
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016483175::NZ_JAEHCJ010000007.1::G00073Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAEHCJ010000007.1All displayed genes belong to this local TCS context.
Neighborhood span72 417-74 956 nt2 540 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
72 417 nt74 956 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JDS93_RS14045GCF_016483175#JDS93_RS14045
RROmpR
72 417-73 106 nt · Forward (+)
JDS93_RS14050GCF_016483175#JDS93_RS14050
HKClassicCurrent focus
73 103-74 956 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000290895#III_RS03550Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0982026
Simplified PFAM architecture for HKOC_0982026
PFAM domain coverage: 226 / 617 aa (36.6%)
1 aa617 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[329-378] | HisKA[398-462] | HATPase_c[506-616]
- Domain count: 3
- Matched identifier: HKOC_0982026
- Positioned domains: HAMP 329-378 ; HisKA 398-462 ; HATPase_c 506-616
Cluster members and taxonomy
Representative gene: GCF_000290895#III_RS03550
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 794 595 · GCF_016483175
AssemblyASM1648317v1 · Contighaploid
Genome composition5 631 503 bp · 35,5% GCBacillus cereus group sp. N34
Signal transduction countsGenes 133 · HK 70 · RR 62CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key