1 Response_reg#1
6-114 aa · 109 aa · 46.8% of protein
Raw token
Response_reg:6:8.17e-35:114:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JDS93_RS10385
Response regulator OmpR family
Bacillus cereus group sp. N34 · GCF_016483175
ClassRRTypeOmpRLength233 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_016483175#JDS93_RS10385Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length233 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 233 aa (80.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa233 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-230 aa · 78 aa · 33.5% of protein
Raw token
Trans_reg_C:153:4.78e-34:230:78:77- Raw architecture: Response_reg:6:8.17e-35:114:110:111#Trans_reg_C:153:4.78e-34:230:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_016483175::NZ_JAEHCJ010000004.1::G00061
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span247587-250040Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJDS93_10380RefSeq proteinWP_002011226.1
Context group ID
GCF_016483175::NZ_JAEHCJ010000004.1::G00061Context members
JDS93_RS10385JDS93_RS10390
Partner locus tags
JDS93_RS10385JDS93_RS10390
Partner old locus tags
JDS93_10380JDS93_10385
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002011226.1Primary protein accession used for annex mappings.
UniProt accessionJ8HQC2Primary UniProt accession resolved in the annex database.
UniProt IDJ8HQC2_BACCEDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJDS93_RS10385Primary locus identifier stored in the genes table.
Old locus tagJDS93_10380Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAEHCJ010000004.1Sequence record reported by the local genomic context database.
Genomic interval247 587-248 288 nt702 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span247 587-250 040 ntGCF_016483175::NZ_JAEHCJ010000004.1::G00061
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016483175::NZ_JAEHCJ010000004.1::G00061Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAEHCJ010000004.1All displayed genes belong to this local TCS context.
Neighborhood span247 587-250 040 nt2 454 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
247 587 nt250 040 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JDS93_RS10385GCF_016483175#JDS93_RS10385
RROmpRCurrent focus
247 587-248 288 nt · Forward (+)
JDS93_RS10390GCF_016483175#JDS93_RS10390
HKClassic
248 298-250 040 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003925#BMYCO0001_RS04975Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1080338
Simplified PFAM architecture for RROC_1080338
PFAM domain coverage: 187 / 233 aa (80.3%)
1 aa233 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[154-230]
- Domain count: 2
- Matched identifier: RROC_1080338
- Positioned domains: Response_reg 6-115 ; Response_reg 6-115 ; Trans_reg_C 154-230 ; Trans_reg_C 154-230
Cluster members and taxonomy
Representative gene: GCF_000003925#BMYCO0001_RS04975
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 794 595 · GCF_016483175
AssemblyASM1648317v1 · Contighaploid
Genome composition5 631 503 bp · 35,5% GCBacillus cereus group sp. N34
Signal transduction countsGenes 133 · HK 70 · RR 62CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key