1 HAMP#1
67-126 aa · 60 aa · 16.5% of protein
Raw token
HAMP:67:0.000000238:126:60:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JDS93_RS08740
Histidine kinase, Classic
Bacillus cereus group sp. N34 · GCF_016483175
ClassHKTypeClassicLength364 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_016483175#JDS93_RS08740Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length364 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage240 / 364 aa (65.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa364 aa
Domain-by-domain annotation3 items
2 HisKA#2
137-204 aa · 68 aa · 18.7% of protein
Raw token
HisKA:137:0.00000000000305:204:68:643 HATPase_c#3
249-360 aa · 112 aa · 30.8% of protein
Raw token
HATPase_c:249:2.19e-24:360:113:109- Raw architecture: HAMP:67:0.000000238:126:60:69#HisKA:137:0.00000000000305:204:68:64#HATPase_c:249:2.19e-24:360:113:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_016483175::NZ_JAEHCJ010000003.1::G00050
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span375649-377434Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJDS93_08735RefSeq proteinWP_199626805.1
Context group ID
GCF_016483175::NZ_JAEHCJ010000003.1::G00050Context members
JDS93_RS08740JDS93_RS08745
Partner locus tags
JDS93_RS08740JDS93_RS08745
Partner old locus tags
JDS93_08735JDS93_08740
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_199626805.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJDS93_RS08740Primary locus identifier stored in the genes table.
Old locus tagJDS93_08735Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAEHCJ010000003.1Sequence record reported by the local genomic context database.
Genomic interval375 649-376 743 nt1 095 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span375 649-377 434 ntGCF_016483175::NZ_JAEHCJ010000003.1::G00050
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016483175::NZ_JAEHCJ010000003.1::G00050Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAEHCJ010000003.1All displayed genes belong to this local TCS context.
Neighborhood span375 649-377 434 nt1 786 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
375 649 nt377 434 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JDS93_RS08740GCF_016483175#JDS93_RS08740
HKClassicCurrent focus
375 649-376 743 nt · Reverse (-)
JDS93_RS08745GCF_016483175#JDS93_RS08745
RROmpR
376 736-377 434 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_016483175#JDS93_RS08740The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2727072
Simplified PFAM architecture for HKOC_2727072
PFAM domain coverage: 222 / 364 aa (61.0%)
1 aa364 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[81-125] | HisKA[138-203] | HATPase_c[249-359]
- Domain count: 3
- Matched identifier: HKOC_2727072
- Positioned domains: HAMP 81-125 ; HisKA 138-203 ; HATPase_c 249-359
Cluster members and taxonomy
Representative gene: GCF_016483175#JDS93_RS08740
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 794 595 · GCF_016483175
AssemblyASM1648317v1 · Contighaploid
Genome composition5 631 503 bp · 35,5% GCBacillus cereus group sp. N34
Signal transduction countsGenes 133 · HK 70 · RR 62CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key