1 Response_reg#1
5-115 aa · 111 aa · 35.8% of protein
Raw token
Response_reg:5:3.14e-20:115:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JDS93_RS05125
Response regulator, unclassified
Bacillus cereus group sp. N34 · GCF_016483175
ClassRRTypeunclassifiedLength310 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_016483175#JDS93_RS05125Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regYcbB
Protein length310 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage252 / 310 aa (81.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 YcbBSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 YcbB#2
159-299 aa · 141 aa · 45.5% of protein
Raw token
YcbB:159:2.2e-61:299:141:131- Raw architecture: Response_reg:5:3.14e-20:115:113:111#YcbB:159:2.2e-61:299:141:131
- Domain description: 1 Response_reg,1 YcbB
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_016483175::NZ_JAEHCJ010000002.1::G00033
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span295140-296072Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJDS93_05125RefSeq proteinWP_078421915.1
Context group ID
GCF_016483175::NZ_JAEHCJ010000002.1::G00033Context members
JDS93_RS05125
Partner locus tags
JDS93_RS05125
Partner old locus tags
JDS93_05125
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_078421915.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJDS93_RS05125Primary locus identifier stored in the genes table.
Old locus tagJDS93_05125Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAEHCJ010000002.1Sequence record reported by the local genomic context database.
Genomic interval295 140-296 072 nt933 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span295 140-296 072 ntGCF_016483175::NZ_JAEHCJ010000002.1::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016483175::NZ_JAEHCJ010000002.1::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAEHCJ010000002.1All displayed genes belong to this local TCS context.
Neighborhood span295 140-296 072 nt933 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
295 140 nt296 072 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
JDS93_RS05125GCF_016483175#JDS93_RS05125
RRunclassifiedCurrent focus
295 140-296 072 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002021835#BW894_RS07665Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + YcbB2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0552556
Simplified PFAM architecture for RROC_0552556
PFAM domain coverage: 249 / 310 aa (80.3%)
1 aa310 aa
Response_regYcbB
- Simplified architecture: Response_reg + YcbB
- Raw architecture: Response_reg[5-114] | YcbB[161-299]
- Domain count: 2
- Matched identifier: RROC_0552556
- Positioned domains: Response_reg 5-114 ; Response_reg 5-114 ; YcbB 161-299 ; YcbB 161-299
Cluster members and taxonomy
Representative gene: GCF_002021835#BW894_RS07665
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 794 595 · GCF_016483175
AssemblyASM1648317v1 · Contighaploid
Genome composition5 631 503 bp · 35,5% GCBacillus cereus group sp. N34
Signal transduction countsGenes 133 · HK 70 · RR 62CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key