1 Response_reg#1
4-112 aa · 109 aa · 49.3% of protein
Raw token
Response_reg:4:1.83e-29:112:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FE544_RS04015
Response regulator OmpR family
Clostridioides difficile · GCF_016093765
ClassRRTypeOmpRLength221 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_016093765#FE544_RS04015Stable P2CS identifier used across views.
GenomeGCF_016093765Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length221 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 221 aa (83.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa221 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
144-219 aa · 76 aa · 34.4% of protein
Raw token
Trans_reg_C:144:4.26e-30:219:78:77- Raw architecture: Response_reg:4:1.83e-29:112:110:111#Trans_reg_C:144:4.26e-30:219:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_016093765::NZ_VBZN01000014.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span115206-116899Genomic interval covered by the local TCS group.
Identifiers
Old locus tagFE544_04070RefSeq proteinWP_021378135.1
Context group ID
GCF_016093765::NZ_VBZN01000014.1::G00016Context members
FE544_RS04015FE544_RS04020
Partner locus tags
FE544_RS04015FE544_RS04020
Partner old locus tags
FE544_04070FE544_04075
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021378135.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFE544_RS04015Primary locus identifier stored in the genes table.
Old locus tagFE544_04070Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_VBZN01000014.1Sequence record reported by the local genomic context database.
Genomic interval115 206-115 871 nt666 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span115 206-116 899 ntGCF_016093765::NZ_VBZN01000014.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016093765::NZ_VBZN01000014.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_VBZN01000014.1All displayed genes belong to this local TCS context.
Neighborhood span115 206-116 899 nt1 694 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
115 206 nt116 899 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
FE544_RS04015GCF_016093765#FE544_RS04015
RROmpRCurrent focus
115 206-115 871 nt · Forward (+)
FE544_RS04020GCF_016093765#FE544_RS04020
HKClassic
115 874-116 899 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000451245#QE9_RS03185Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1679647
Simplified PFAM architecture for RROC_1679647
PFAM domain coverage: 185 / 221 aa (83.7%)
1 aa221 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[144-219]
- Domain count: 2
- Matched identifier: RROC_1679647
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 144-219 ; Trans_reg_C 144-219
Cluster members and taxonomy
Representative gene: GCF_000451245#QE9_RS03185
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_016093765
AssemblyASM1609376v1 · Scaffoldhaploid
Genome composition4 086 548 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 102 · HK 49 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key