1 Response_reg#1
17-91 aa · 75 aa · 49.3% of protein
Raw token
Response_reg:17:0.00000000000000226:91:75:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GIJ77_RS01040
Response regulator, unclassified
Bifidobacterium longum · GCF_015931225
ClassRRTypeunclassifiedLength152 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_015931225#GIJ77_RS01040Stable P2CS identifier used across views.
GenomeGCF_015931225Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length152 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage75 / 152 aa (49.3%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:17:0.00000000000000226:91:75:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_015931225::NZ_WJRJ01000001.1::G00003
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span223160-223618Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGIJ77_01050RefSeq proteinWP_231691754.1
Context group ID
GCF_015931225::NZ_WJRJ01000001.1::G00003Context members
GIJ77_RS01040
Partner locus tags
GIJ77_RS01040
Partner old locus tags
GIJ77_01050
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_231691754.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGIJ77_RS01040Primary locus identifier stored in the genes table.
Old locus tagGIJ77_01050Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WJRJ01000001.1Sequence record reported by the local genomic context database.
Genomic interval223 160-223 618 nt459 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span223 160-223 618 ntGCF_015931225::NZ_WJRJ01000001.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015931225::NZ_WJRJ01000001.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WJRJ01000001.1All displayed genes belong to this local TCS context.
Neighborhood span223 160-223 618 nt459 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
223 160 nt223 618 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
GIJ77_RS01040GCF_015931225#GIJ77_RS01040
RRunclassifiedCurrent focus
223 160-223 618 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_016882605#GDP94_RS00565Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2195655
Simplified PFAM architecture for RROC_2195655
PFAM domain coverage: 109 / 173 aa (63.0%)
1 aa173 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[11-119]
- Domain count: 1
- Matched identifier: RROC_2195655
- Positioned domains: Response_reg 11-119
Cluster members and taxonomy
Representative gene: GCF_016882605#GDP94_RS00565
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_015931225
AssemblyASM1593122v1 · Contighaploid
Genome composition2 278 698 bp · 59,5% GCBifidobacterium longum
Signal transduction countsGenes 21 · HK 9 · RR 12CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key