1 Response_reg#1
5-108 aa · 104 aa · 43.7% of protein
Raw token
Response_reg:5:0.00000000000645:108:106:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABD98_RS19900
Response regulator LytTR family
Bacillus mycoides · GCF_015845385
ClassRRTypeLytTRLength238 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_015845385#ABD98_RS19900Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length238 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage206 / 238 aa (86.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa238 aa
Domain-by-domain annotation2 items
2 LytTR#2
136-237 aa · 102 aa · 42.9% of protein
Raw token
LytTR:136:2.37e-30:237:102:98- Raw architecture: Response_reg:5:0.00000000000645:108:106:111#LytTR:136:2.37e-30:237:102:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_015845385::NZ_LDHL01000035.1::G00057
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span90857-91573Genomic interval covered by the local TCS group.
Identifiers
Old locus tagABD98_19545RefSeq proteinWP_002089871.1
Context group ID
GCF_015845385::NZ_LDHL01000035.1::G00057Context members
ABD98_RS19900
Partner locus tags
ABD98_RS19900
Partner old locus tags
ABD98_19545
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002089871.1Primary protein accession used for annex mappings.
UniProt accessionA9VTF6Primary UniProt accession resolved in the annex database.
UniProt IDA9VTF6_BACMKDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABD98_RS19900Primary locus identifier stored in the genes table.
Old locus tagABD98_19545Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LDHL01000035.1Sequence record reported by the local genomic context database.
Genomic interval90 857-91 573 nt717 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span90 857-91 573 ntGCF_015845385::NZ_LDHL01000035.1::G00057
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015845385::NZ_LDHL01000035.1::G00057Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LDHL01000035.1All displayed genes belong to this local TCS context.
Neighborhood span90 857-91 573 nt717 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
90 857 nt91 573 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ABD98_RS19900GCF_015845385#ABD98_RS19900
RRLytTRCurrent focus
90 857-91 573 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003925#BMYCO0001_RS24455Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0932198
Simplified PFAM architecture for RROC_0932198
PFAM domain coverage: 205 / 238 aa (86.1%)
1 aa238 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[5-109] | LytTR[137-236]
- Domain count: 2
- Matched identifier: RROC_0932198
- Positioned domains: Response_reg 5-109 ; Response_reg 5-109 ; LytTR 137-236 ; LytTR 137-236
Cluster members and taxonomy
Representative gene: GCF_000003925#BMYCO0001_RS24455
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_015845385
AssemblyASM1584538v1 · Scaffoldhaploid
Genome composition5 618 585 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 125 · HK 69 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key