1 Response_reg#1
4-116 aa · 113 aa · 56.5% of protein
Raw token
Response_reg:4:3.41e-27:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABD98_RS19605
Response regulator NarL family
Bacillus mycoides · GCF_015845385
ClassRRTypeNarLLength200 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015845385#ABD98_RS19605Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length200 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 200 aa (84.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa200 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
139-194 aa · 56 aa · 28.0% of protein
Raw token
HTH_LUXR:139:9.99e-21:194:56:58- Raw architecture: Response_reg:4:3.41e-27:116:113:111#HTH_LUXR:139:9.99e-21:194:56:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015845385::NZ_LDHL01000035.1::G00055
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span23510-25239Genomic interval covered by the local TCS group.
Identifiers
Old locus tagABD98_19245RefSeq proteinWP_002130086.1
Context group ID
GCF_015845385::NZ_LDHL01000035.1::G00055Context members
ABD98_RS19605ABD98_RS19610
Partner locus tags
ABD98_RS19605ABD98_RS19610
Partner old locus tags
ABD98_19245ABD98_19250
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002130086.1Primary protein accession used for annex mappings.
UniProt accessionA0ABC9RAC4Primary UniProt accession resolved in the annex database.
UniProt IDA0ABC9RAC4_BACMYDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABD98_RS19605Primary locus identifier stored in the genes table.
Old locus tagABD98_19245Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LDHL01000035.1Sequence record reported by the local genomic context database.
Genomic interval23 510-24 112 nt603 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span23 510-25 239 ntGCF_015845385::NZ_LDHL01000035.1::G00055
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015845385::NZ_LDHL01000035.1::G00055Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LDHL01000035.1All displayed genes belong to this local TCS context.
Neighborhood span23 510-25 239 nt1 730 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
23 510 nt25 239 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ABD98_RS19605GCF_015845385#ABD98_RS19605
RRNarLCurrent focus
23 510-24 112 nt · Reverse (-)
ABD98_RS19610GCF_015845385#ABD98_RS19610
HKClassic
24 109-25 239 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000018825#BCERKBAB4_RS25840Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2134478
Simplified PFAM architecture for RROC_2134478
PFAM domain coverage: 169 / 200 aa (84.5%)
1 aa200 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[4-116] | GerE[139-194]
- Domain count: 2
- Matched identifier: RROC_2134478
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; GerE 139-194 ; GerE 139-194
Cluster members and taxonomy
Representative gene: GCF_000018825#BCERKBAB4_RS25840
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_015845385
AssemblyASM1584538v1 · Scaffoldhaploid
Genome composition5 618 585 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 125 · HK 69 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key