1 HAMP#1
167-235 aa · 69 aa · 14.5% of protein
Raw token
HAMP:167:0.000000000000902:235:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABD98_RS15460
Histidine kinase, Classic
Bacillus mycoides · GCF_015845385
ClassHKTypeClassicLength476 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015845385#ABD98_RS15460Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length476 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage236 / 476 aa (49.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa476 aa
Domain-by-domain annotation3 items
2 HisKA#2
247-304 aa · 58 aa · 12.2% of protein
Raw token
HisKA:247:0.00000000000421:304:58:643 HATPase_c#3
356-464 aa · 109 aa · 22.9% of protein
Raw token
HATPase_c:356:1.25e-21:464:109:109- Raw architecture: HAMP:167:0.000000000000902:235:69:69#HisKA:247:0.00000000000421:304:58:64#HATPase_c:356:1.25e-21:464:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015845385::NZ_LDHL01000024.1::G00046
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span69999-72112Genomic interval covered by the local TCS group.
Identifiers
Old locus tagABD98_15220RefSeq proteinWP_002034822.1
Context group ID
GCF_015845385::NZ_LDHL01000024.1::G00046Context members
ABD98_RS15455ABD98_RS15460
Partner locus tags
ABD98_RS15455ABD98_RS15460
Partner old locus tags
ABD98_15215ABD98_15220
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002034822.1Primary protein accession used for annex mappings.
UniProt accessionR8HJF8Primary UniProt accession resolved in the annex database.
UniProt IDR8HJF8_BACCEDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABD98_RS15460Primary locus identifier stored in the genes table.
Old locus tagABD98_15220Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LDHL01000024.1Sequence record reported by the local genomic context database.
Genomic interval70 682-72 112 nt1 431 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span69 999-72 112 ntGCF_015845385::NZ_LDHL01000024.1::G00046
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015845385::NZ_LDHL01000024.1::G00046Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LDHL01000024.1All displayed genes belong to this local TCS context.
Neighborhood span69 999-72 112 nt2 114 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
69 999 nt72 112 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ABD98_RS15455GCF_015845385#ABD98_RS15455
RROmpR
69 999-70 670 nt · Forward (+)
ABD98_RS15460GCF_015845385#ABD98_RS15460
HKClassicCurrent focus
70 682-72 112 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000018825#BCERKBAB4_RS25345Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1654810
Simplified PFAM architecture for HKOC_1654810
PFAM domain coverage: 218 / 476 aa (45.8%)
1 aa476 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[184-235] | HisKA[248-308] | HATPase_c[358-462]
- Domain count: 3
- Matched identifier: HKOC_1654810
- Positioned domains: HAMP 184-235 ; HisKA 248-308 ; HATPase_c 358-462
Cluster members and taxonomy
Representative gene: GCF_000018825#BCERKBAB4_RS25345
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_015845385
AssemblyASM1584538v1 · Scaffoldhaploid
Genome composition5 618 585 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 125 · HK 69 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key