1 Response_reg#1
6-115 aa · 110 aa · 47.4% of protein
Raw token
Response_reg:6:8.6e-39:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABD98_RS08800
Response regulator OmpR family
Bacillus mycoides · GCF_015845385
ClassRRTypeOmpRLength232 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015845385#ABD98_RS08800Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length232 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 232 aa (80.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa232 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
154-230 aa · 77 aa · 33.2% of protein
Raw token
Trans_reg_C:154:3.5e-31:230:77:77- Raw architecture: Response_reg:6:8.6e-39:115:111:111#Trans_reg_C:154:3.5e-31:230:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015845385::NZ_LDHL01000015.1::G00027
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1179345-1181100Genomic interval covered by the local TCS group.
Identifiers
Old locus tagABD98_08720RefSeq proteinWP_002141282.1
Context group ID
GCF_015845385::NZ_LDHL01000015.1::G00027Context members
ABD98_RS08795ABD98_RS08800
Partner locus tags
ABD98_RS08795ABD98_RS08800
Partner old locus tags
ABD98_08715ABD98_08720
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002141282.1Primary protein accession used for annex mappings.
UniProt accessionA0A1S9T2I9Primary UniProt accession resolved in the annex database.
UniProt IDA0A1S9T2I9_BACMYDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABD98_RS08800Primary locus identifier stored in the genes table.
Old locus tagABD98_08720Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LDHL01000015.1Sequence record reported by the local genomic context database.
Genomic interval1 180 402-1 181 100 nt699 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 179 345-1 181 100 ntGCF_015845385::NZ_LDHL01000015.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015845385::NZ_LDHL01000015.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LDHL01000015.1All displayed genes belong to this local TCS context.
Neighborhood span1 179 345-1 181 100 nt1 756 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 179 345 nt1 181 100 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ABD98_RS08795GCF_015845385#ABD98_RS08795
HKClassic
1 179 345-1 180 412 nt · Reverse (-)
ABD98_RS08800GCF_015845385#ABD98_RS08800
RROmpRCurrent focus
1 180 402-1 181 100 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000517985#C174_RS11825Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1122036
Simplified PFAM architecture for RROC_1122036
PFAM domain coverage: 185 / 232 aa (79.7%)
1 aa232 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-114] | Trans_reg_C[154-229]
- Domain count: 2
- Matched identifier: RROC_1122036
- Positioned domains: Response_reg 6-114 ; Response_reg 6-114 ; Trans_reg_C 154-229 ; Trans_reg_C 154-229
Cluster members and taxonomy
Representative gene: GCF_000517985#C174_RS11825
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_015845385
AssemblyASM1584538v1 · Scaffoldhaploid
Genome composition5 618 585 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 125 · HK 69 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key