1 Response_reg#1
6-116 aa · 111 aa · 52.6% of protein
Raw token
Response_reg:6:5.02e-37:116:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABD98_RS07090
Response regulator NarL family
Bacillus mycoides · GCF_015845385
ClassRRTypeNarLLength211 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015845385#ABD98_RS07090Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length211 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage166 / 211 aa (78.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa211 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
151-205 aa · 55 aa · 26.1% of protein
Raw token
HTH_LUXR:151:7.76e-24:205:55:58- Raw architecture: Response_reg:6:5.02e-37:116:111:111#HTH_LUXR:151:7.76e-24:205:55:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015845385::NZ_LDHL01000015.1::G00025
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span840847-842594Genomic interval covered by the local TCS group.
Identifiers
Old locus tagABD98_07025RefSeq proteinWP_197236062.1
Context group ID
GCF_015845385::NZ_LDHL01000015.1::G00025Context members
ABD98_RS07090ABD98_RS07095
Partner locus tags
ABD98_RS07090ABD98_RS07095
Partner old locus tags
ABD98_07025ABD98_07030
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_197236062.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABD98_RS07090Primary locus identifier stored in the genes table.
Old locus tagABD98_07025Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LDHL01000015.1Sequence record reported by the local genomic context database.
Genomic interval840 847-841 482 nt636 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span840 847-842 594 ntGCF_015845385::NZ_LDHL01000015.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015845385::NZ_LDHL01000015.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LDHL01000015.1All displayed genes belong to this local TCS context.
Neighborhood span840 847-842 594 nt1 748 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
840 847 nt842 594 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ABD98_RS07090GCF_015845385#ABD98_RS07090
RRNarLCurrent focus
840 847-841 482 nt · Reverse (-)
ABD98_RS07095GCF_015845385#ABD98_RS07095
HKClassic
841 497-842 594 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015845385#ABD98_RS07090The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2010110
Simplified PFAM architecture for RROC_2010110
PFAM domain coverage: 167 / 211 aa (79.1%)
1 aa211 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[6-116] | GerE[150-205]
- Domain count: 2
- Matched identifier: RROC_2010110
- Positioned domains: Response_reg 6-116 ; GerE 150-205
Cluster members and taxonomy
Representative gene: GCF_015845385#ABD98_RS07090
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_015845385
AssemblyASM1584538v1 · Scaffoldhaploid
Genome composition5 618 585 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 125 · HK 69 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key