1 HAMP#1
59-127 aa · 69 aa · 19.2% of protein
Raw token
HAMP:59:0.0000000787:127:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABD98_RS05930
Histidine kinase, Classic
Bacillus mycoides · GCF_015845385
ClassHKTypeClassicLength360 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015845385#ABD98_RS05930Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length360 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage232 / 360 aa (64.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa360 aa
Domain-by-domain annotation3 items
2 HisKA#2
139-202 aa · 64 aa · 17.8% of protein
Raw token
HisKA:139:0.0000000000000069:202:64:643 HATPase_c#3
251-349 aa · 99 aa · 27.5% of protein
Raw token
HATPase_c:251:5.83e-16:349:99:109- Raw architecture: HAMP:59:0.0000000787:127:69:69#HisKA:139:0.0000000000000069:202:64:64#HATPase_c:251:5.83e-16:349:99:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015845385::NZ_LDHL01000015.1::G00022
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span605358-607123Genomic interval covered by the local TCS group.
Identifiers
Old locus tagABD98_05895RefSeq proteinWP_197236041.1
Context group ID
GCF_015845385::NZ_LDHL01000015.1::G00022Context members
ABD98_RS05930ABD98_RS05935
Partner locus tags
ABD98_RS05930ABD98_RS05935
Partner old locus tags
ABD98_05895ABD98_05900
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_197236041.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABD98_RS05930Primary locus identifier stored in the genes table.
Old locus tagABD98_05895Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LDHL01000015.1Sequence record reported by the local genomic context database.
Genomic interval605 358-606 440 nt1 083 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span605 358-607 123 ntGCF_015845385::NZ_LDHL01000015.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015845385::NZ_LDHL01000015.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LDHL01000015.1All displayed genes belong to this local TCS context.
Neighborhood span605 358-607 123 nt1 766 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
605 358 nt607 123 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ABD98_RS05930GCF_015845385#ABD98_RS05930
HKClassicCurrent focus
605 358-606 440 nt · Reverse (-)
ABD98_RS05935GCF_015845385#ABD98_RS05935
RROmpR
606 437-607 123 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015845385#ABD98_RS05930The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2749574
Simplified PFAM architecture for HKOC_2749574
PFAM domain coverage: 204 / 360 aa (56.7%)
1 aa360 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[84-126] | HisKA[139-202] | HATPase_c[252-348]
- Domain count: 3
- Matched identifier: HKOC_2749574
- Positioned domains: HAMP 84-126 ; HisKA 139-202 ; HATPase_c 252-348
Cluster members and taxonomy
Representative gene: GCF_015845385#ABD98_RS05930
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_015845385
AssemblyASM1584538v1 · Scaffoldhaploid
Genome composition5 618 585 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 125 · HK 69 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key