1 HAMP#1
155-226 aa · 72 aa · 15.8% of protein
Raw token
HAMP:155:0.000000000000673:226:72:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABD98_RS02905
Histidine kinase, Classic
Bacillus mycoides · GCF_015845385
ClassHKTypeClassicLength457 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015845385#ABD98_RS02905Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length457 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage250 / 457 aa (54.7%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa457 aa
Domain-by-domain annotation3 items
2 HisKA#2
233-296 aa · 64 aa · 14.0% of protein
Raw token
HisKA:233:0.00000000000175:296:64:643 HATPase_c#3
342-455 aa · 114 aa · 24.9% of protein
Raw token
HATPase_c:342:5.26e-28:455:114:109- Raw architecture: HAMP:155:0.000000000000673:226:72:69#HisKA:233:0.00000000000175:296:64:64#HATPase_c:342:5.26e-28:455:114:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015845385::NZ_LDHL01000015.1::G00013
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span8128-10172Genomic interval covered by the local TCS group.
Identifiers
Old locus tagABD98_02895RefSeq proteinWP_002128056.1
Context group ID
GCF_015845385::NZ_LDHL01000015.1::G00013Context members
ABD98_RS02905ABD98_RS02910
Partner locus tags
ABD98_RS02905ABD98_RS02910
Partner old locus tags
ABD98_02895ABD98_02900
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002128056.1Primary protein accession used for annex mappings.
UniProt accessionA0ABX6Z1G8Primary UniProt accession resolved in the annex database.
UniProt IDA0ABX6Z1G8_BACMYDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABD98_RS02905Primary locus identifier stored in the genes table.
Old locus tagABD98_02895Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LDHL01000015.1Sequence record reported by the local genomic context database.
Genomic interval8 128-9 501 nt1 374 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span8 128-10 172 ntGCF_015845385::NZ_LDHL01000015.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015845385::NZ_LDHL01000015.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LDHL01000015.1All displayed genes belong to this local TCS context.
Neighborhood span8 128-10 172 nt2 045 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
8 128 nt10 172 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ABD98_RS02905GCF_015845385#ABD98_RS02905
HKClassicCurrent focus
8 128-9 501 nt · Reverse (-)
ABD98_RS02910GCF_015845385#ABD98_RS02910
RROmpR
9 498-10 172 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003925#BMYCO0001_RS14055Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1873332
Simplified PFAM architecture for HKOC_1873332
PFAM domain coverage: 232 / 457 aa (50.8%)
1 aa457 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[171-225] | HisKA[232-296] | HATPase_c[343-454]
- Domain count: 3
- Matched identifier: HKOC_1873332
- Positioned domains: HAMP 171-225 ; HisKA 232-296 ; HATPase_c 343-454
Cluster members and taxonomy
Representative gene: GCF_000003925#BMYCO0001_RS14055
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_015845385
AssemblyASM1584538v1 · Scaffoldhaploid
Genome composition5 618 585 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 125 · HK 69 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key