1 HAMP#1
321-388 aa · 68 aa · 10.8% of protein
Raw token
HAMP:321:0.000000000000166:388:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABD98_RS02775
Histidine kinase, Classic
Bacillus mycoides · GCF_015845385
ClassHKTypeClassicLength627 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_015845385#ABD98_RS02775Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length627 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage237 / 627 aa (37.8%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa627 aa
Domain-by-domain annotation3 items
2 HisKA#2
408-472 aa · 65 aa · 10.4% of protein
Raw token
HisKA:408:0.000000000000062:472:65:643 HATPase_c#3
520-623 aa · 104 aa · 16.6% of protein
Raw token
HATPase_c:520:9.68e-21:623:105:109- Raw architecture: HAMP:321:0.000000000000166:388:68:69#HisKA:408:0.000000000000062:472:65:64#HATPase_c:520:9.68e-21:623:105:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_015845385::NZ_LDHL01000014.1::G00011
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span51661-53544Genomic interval covered by the local TCS group.
Identifiers
Old locus tagABD98_02755RefSeq proteinWP_197235990.1
Context group ID
GCF_015845385::NZ_LDHL01000014.1::G00011Context members
ABD98_RS02775
Partner locus tags
ABD98_RS02775
Partner old locus tags
ABD98_02755
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_197235990.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABD98_RS02775Primary locus identifier stored in the genes table.
Old locus tagABD98_02755Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LDHL01000014.1Sequence record reported by the local genomic context database.
Genomic interval51 661-53 544 nt1 884 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span51 661-53 544 ntGCF_015845385::NZ_LDHL01000014.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015845385::NZ_LDHL01000014.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LDHL01000014.1All displayed genes belong to this local TCS context.
Neighborhood span51 661-53 544 nt1 884 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
51 661 nt53 544 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ABD98_RS02775GCF_015845385#ABD98_RS02775
HKClassicCurrent focus
51 661-53 544 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015845385#ABD98_RS02775The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0956210
Simplified PFAM architecture for HKOC_0956210
PFAM domain coverage: 221 / 627 aa (35.2%)
1 aa627 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[339-388] | HisKA[408-472] | HATPase_c[519-624]
- Domain count: 3
- Matched identifier: HKOC_0956210
- Positioned domains: HAMP 339-388 ; HisKA 408-472 ; HATPase_c 519-624
Cluster members and taxonomy
Representative gene: GCF_015845385#ABD98_RS02775
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_015845385
AssemblyASM1584538v1 · Scaffoldhaploid
Genome composition5 618 585 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 125 · HK 69 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key