1 HAMP#1
39-109 aa · 71 aa · 20.2% of protein
Raw token
HAMP:39:0.000000001:109:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABD98_RS02510
Histidine kinase, Classic
Bacillus mycoides · GCF_015845385
ClassHKTypeClassicLength352 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015845385#ABD98_RS02510Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length352 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage248 / 352 aa (70.5%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa352 aa
Domain-by-domain annotation3 items
2 HisKA#2
120-185 aa · 66 aa · 18.8% of protein
Raw token
HisKA:120:9.8e-18:185:66:643 HATPase_c#3
238-348 aa · 111 aa · 31.5% of protein
Raw token
HATPase_c:238:1.62e-25:348:111:109- Raw architecture: HAMP:39:0.000000001:109:71:69#HisKA:120:9.8e-18:185:66:64#HATPase_c:238:1.62e-25:348:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015845385::NZ_LDHL01000013.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span13876-15644Genomic interval covered by the local TCS group.
Identifiers
Old locus tagABD98_02485RefSeq proteinWP_002128066.1
Context group ID
GCF_015845385::NZ_LDHL01000013.1::G00010Context members
ABD98_RS02505ABD98_RS02510
Partner locus tags
ABD98_RS02505ABD98_RS02510
Partner old locus tags
ABD98_02480ABD98_02485
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002128066.1Primary protein accession used for annex mappings.
UniProt accessionJ8I5Q2Primary UniProt accession resolved in the annex database.
UniProt IDJ8I5Q2_BACCEDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABD98_RS02510Primary locus identifier stored in the genes table.
Old locus tagABD98_02485Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LDHL01000013.1Sequence record reported by the local genomic context database.
Genomic interval14 586-15 644 nt1 059 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span13 876-15 644 ntGCF_015845385::NZ_LDHL01000013.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015845385::NZ_LDHL01000013.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LDHL01000013.1All displayed genes belong to this local TCS context.
Neighborhood span13 876-15 644 nt1 769 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
13 876 nt15 644 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ABD98_RS02505GCF_015845385#ABD98_RS02505
RROmpR
13 876-14 589 nt · Forward (+)
ABD98_RS02510GCF_015845385#ABD98_RS02510
HKClassicCurrent focus
14 586-15 644 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003925#BMYCO0001_RS14455Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2788665
Simplified PFAM architecture for HKOC_2788665
PFAM domain coverage: 230 / 352 aa (65.3%)
1 aa352 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[56-109] | HisKA[121-185] | HATPase_c[238-348]
- Domain count: 3
- Matched identifier: HKOC_2788665
- Positioned domains: HAMP 56-109 ; HisKA 121-185 ; HATPase_c 238-348
Cluster members and taxonomy
Representative gene: GCF_000003925#BMYCO0001_RS14455
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_015845385
AssemblyASM1584538v1 · Scaffoldhaploid
Genome composition5 618 585 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 125 · HK 69 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key