1 Response_reg#1
4-116 aa · 113 aa · 53.1% of protein
Raw token
Response_reg:4:3.59e-34:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABE17_RS12435
Response regulator NarL family
Bacillus mycoides · GCF_015845055
ClassRRTypeNarLLength213 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015845055#ABE17_RS12435Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length213 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage168 / 213 aa (78.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa213 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
150-204 aa · 55 aa · 25.8% of protein
Raw token
HTH_LUXR:150:9.89e-25:204:55:58- Raw architecture: Response_reg:4:3.59e-34:116:113:111#HTH_LUXR:150:9.89e-25:204:55:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015845055::NZ_LDGT01000027.1::G00032
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span90938-93413Genomic interval covered by the local TCS group.
Identifiers
Old locus tagABE17_12175RefSeq proteinWP_002035350.1
Context group ID
GCF_015845055::NZ_LDGT01000027.1::G00032Context members
ABE17_RS12435ABE17_RS12440
Partner locus tags
ABE17_RS12435ABE17_RS12440
Partner old locus tags
ABE17_12175ABE17_12180
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002035350.1Primary protein accession used for annex mappings.
UniProt accessionA0A1S9TPN7Primary UniProt accession resolved in the annex database.
UniProt IDA0A1S9TPN7_BACCEDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABE17_RS12435Primary locus identifier stored in the genes table.
Old locus tagABE17_12175Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LDGT01000027.1Sequence record reported by the local genomic context database.
Genomic interval90 938-91 579 nt642 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span90 938-93 413 ntGCF_015845055::NZ_LDGT01000027.1::G00032
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015845055::NZ_LDGT01000027.1::G00032Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LDGT01000027.1All displayed genes belong to this local TCS context.
Neighborhood span90 938-93 413 nt2 476 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
90 938 nt93 413 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ABE17_RS12435GCF_015845055#ABE17_RS12435
RRNarLCurrent focus
90 938-91 579 nt · Reverse (-)
ABE17_RS12440GCF_015845055#ABE17_RS12440
HKClassic
91 581-93 413 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003925#BMYCO0001_RS02840Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1962476
Simplified PFAM architecture for RROC_1962476
PFAM domain coverage: 169 / 213 aa (79.3%)
1 aa213 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[4-116] | GerE[149-204]
- Domain count: 2
- Matched identifier: RROC_1962476
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; GerE 149-204 ; GerE 149-204
Cluster members and taxonomy
Representative gene: GCF_000003925#BMYCO0001_RS02840
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_015845055
AssemblyASM1584505v1 · Scaffoldhaploid
Genome composition5 502 465 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 125 · HK 68 · RR 57CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key