1 HAMP#1
161-229 aa · 69 aa · 15.1% of protein
Raw token
HAMP:161:6.71e-16:229:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABE17_RS12350
Histidine kinase, Classic
Bacillus mycoides · GCF_015845055
ClassHKTypeClassicLength456 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015845055#ABE17_RS12350Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length456 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage243 / 456 aa (53.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa456 aa
Domain-by-domain annotation3 items
2 HisKA#2
234-298 aa · 65 aa · 14.3% of protein
Raw token
HisKA:234:0.0000000000000146:298:65:643 HATPase_c#3
346-454 aa · 109 aa · 23.9% of protein
Raw token
HATPase_c:346:2.17e-36:454:109:109- Raw architecture: HAMP:161:6.71e-16:229:69:69#HisKA:234:0.0000000000000146:298:65:64#HATPase_c:346:2.17e-36:454:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015845055::NZ_LDGT01000027.1::G00031
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span70535-72594Genomic interval covered by the local TCS group.
Identifiers
Old locus tagABE17_12090RefSeq proteinWP_002140374.1
Context group ID
GCF_015845055::NZ_LDGT01000027.1::G00031Context members
ABE17_RS12345ABE17_RS12350
Partner locus tags
ABE17_RS12345ABE17_RS12350
Partner old locus tags
ABE17_12085ABE17_12090
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002140374.1Primary protein accession used for annex mappings.
UniProt accessionA9VET0Primary UniProt accession resolved in the annex database.
UniProt IDA9VET0_BACMKDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABE17_RS12350Primary locus identifier stored in the genes table.
Old locus tagABE17_12090Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LDGT01000027.1Sequence record reported by the local genomic context database.
Genomic interval71 224-72 594 nt1 371 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span70 535-72 594 ntGCF_015845055::NZ_LDGT01000027.1::G00031
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015845055::NZ_LDGT01000027.1::G00031Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LDGT01000027.1All displayed genes belong to this local TCS context.
Neighborhood span70 535-72 594 nt2 060 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
70 535 nt72 594 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ABE17_RS12345GCF_015845055#ABE17_RS12345
RROmpR
70 535-71 212 nt · Forward (+)
ABE17_RS12350GCF_015845055#ABE17_RS12350
HKClassicCurrent focus
71 224-72 594 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003925#BMYCO0001_RS02755Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1887606
Simplified PFAM architecture for HKOC_1887606
PFAM domain coverage: 225 / 456 aa (49.3%)
1 aa456 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[178-229] | HisKA[235-298] | HATPase_c[346-454]
- Domain count: 3
- Matched identifier: HKOC_1887606
- Positioned domains: HAMP 178-229 ; HisKA 235-298 ; HATPase_c 346-454
Cluster members and taxonomy
Representative gene: GCF_000003925#BMYCO0001_RS02755
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_015845055
AssemblyASM1584505v1 · Scaffoldhaploid
Genome composition5 502 465 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 125 · HK 68 · RR 57CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key