1 Response_reg#1
4-113 aa · 110 aa · 47.8% of protein
Raw token
Response_reg:4:7.08e-39:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDIF27147_RS09665
Response regulator OmpR family
Clostridioides difficile R20291 · GCF_015732555
ClassRRTypeOmpRLength230 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015732555#CDIF27147_RS09665Stable P2CS identifier used across views.
GenomeGCF_015732555Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length230 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 230 aa (79.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa230 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
154-226 aa · 73 aa · 31.7% of protein
Raw token
Trans_reg_C:154:2.87e-33:226:73:77- Raw architecture: Response_reg:4:7.08e-39:113:111:111#Trans_reg_C:154:2.87e-33:226:73:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015732555::NZ_CP029423.1::G00032
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2060540-2062155Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCDIF27147_01974RefSeq proteinWP_024738629.1
Context group ID
GCF_015732555::NZ_CP029423.1::G00032Context members
CDIF27147_RS09665CDIF27147_RS09670
Partner locus tags
CDIF27147_RS09665CDIF27147_RS09670
Partner old locus tags
CDIF27147_01974CDIF27147_01975
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_024738629.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW5F663Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW5F663_CLOSYDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDIF27147_RS09665Primary locus identifier stored in the genes table.
Old locus tagCDIF27147_01974Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP029423.1Sequence record reported by the local genomic context database.
Genomic interval2 060 540-2 061 232 nt693 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 060 540-2 062 155 ntGCF_015732555::NZ_CP029423.1::G00032
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015732555::NZ_CP029423.1::G00032Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP029423.1All displayed genes belong to this local TCS context.
Neighborhood span2 060 540-2 062 155 nt1 616 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 060 540 nt2 062 155 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CDIF27147_RS09665GCF_015732555#CDIF27147_RS09665
RROmpRCurrent focus
2 060 540-2 061 232 nt · Forward (+)
CDIF27147_RS09670GCF_015732555#CDIF27147_RS09670
HKClassic
2 061 238-2 062 155 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000027105#CDR20291_RS09535Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1199978
Simplified PFAM architecture for RROC_1199978
PFAM domain coverage: 183 / 230 aa (79.6%)
1 aa230 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[153-226]
- Domain count: 2
- Matched identifier: RROC_1199978
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 153-226 ; Trans_reg_C 153-226
Cluster members and taxonomy
Representative gene: GCF_000027105#CDR20291_RS09535
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 645 463 · GCF_015732555
AssemblyASM1573255v1 · Complete Genomehaploid
Genome composition4 204 902 bp · 29,0% GCClostridioides difficile R20291
Signal transduction countsGenes 108 · HK 51 · RR 57CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key