1 Response_reg#1
4-113 aa · 110 aa · 48.2% of protein
Raw token
Response_reg:4:2.42e-34:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDIF101085_RS18115
Response regulator OmpR family
Clostridioides difficile · GCF_015732535
ClassRRTypeOmpRLength228 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015732535#CDIF101085_RS18115Stable P2CS identifier used across views.
GenomeGCF_015732535Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 228 aa (82.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa228 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
144-221 aa · 78 aa · 34.2% of protein
Raw token
Trans_reg_C:144:9.71e-30:221:78:77- Raw architecture: Response_reg:4:2.42e-34:113:111:111#Trans_reg_C:144:9.71e-30:221:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015732535::NZ_CP021319.1::G00057
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3902437-3904099Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCDIF101085_03738RefSeq proteinWP_003422278.1
Context group ID
GCF_015732535::NZ_CP021319.1::G00057Context members
CDIF101085_RS18110CDIF101085_RS18115
Partner locus tags
CDIF101085_RS18110CDIF101085_RS18115
Partner old locus tags
CDIF101085_03737CDIF101085_03738
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003422278.1Primary protein accession used for annex mappings.
UniProt accessionD5Q9Z0Primary UniProt accession resolved in the annex database.
UniProt IDD5Q9Z0_CLODIDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDIF101085_RS18115Primary locus identifier stored in the genes table.
Old locus tagCDIF101085_03738Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP021319.1Sequence record reported by the local genomic context database.
Genomic interval3 903 413-3 904 099 nt687 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 902 437-3 904 099 ntGCF_015732535::NZ_CP021319.1::G00057
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015732535::NZ_CP021319.1::G00057Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP021319.1All displayed genes belong to this local TCS context.
Neighborhood span3 902 437-3 904 099 nt1 663 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 902 437 nt3 904 099 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CDIF101085_RS18110GCF_015732535#CDIF101085_RS18110
HKClassic
3 902 437-3 903 426 nt · Reverse (-)
CDIF101085_RS18115GCF_015732535#CDIF101085_RS18115
RROmpRCurrent focus
3 903 413-3 904 099 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000155065#QAE_RS0217630Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1302113
Simplified PFAM architecture for RROC_1302113
PFAM domain coverage: 188 / 228 aa (82.5%)
1 aa228 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[144-221]
- Domain count: 2
- Matched identifier: RROC_1302113
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 144-221 ; Trans_reg_C 144-221
Cluster members and taxonomy
Representative gene: GCF_000155065#QAE_RS0217630
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_015732535
AssemblyASM1573253v1 · Complete Genomehaploid
Genome composition4 045 635 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 102 · HK 49 · RR 53CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key