1 Response_reg#1
4-113 aa · 110 aa · 48.2% of protein
Raw token
Response_reg:4:1.94e-30:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDIF101085_RS09025
Response regulator OmpR family
Clostridioides difficile · GCF_015732535
ClassRRTypeOmpRLength228 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015732535#CDIF101085_RS09025Stable P2CS identifier used across views.
GenomeGCF_015732535Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 228 aa (82.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa228 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-224 aa · 78 aa · 34.2% of protein
Raw token
Trans_reg_C:147:1.05e-29:224:78:77- Raw architecture: Response_reg:4:1.94e-30:113:111:111#Trans_reg_C:147:1.05e-29:224:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015732535::NZ_CP021319.1::G00029
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1901866-1903598Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCDIF101085_01860RefSeq proteinWP_022616332.1
Context group ID
GCF_015732535::NZ_CP021319.1::G00029Context members
CDIF101085_RS09025CDIF101085_RS09030
Partner locus tags
CDIF101085_RS09025CDIF101085_RS09030
Partner old locus tags
CDIF101085_01860CDIF101085_01861
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_022616332.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDIF101085_RS09025Primary locus identifier stored in the genes table.
Old locus tagCDIF101085_01860Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP021319.1Sequence record reported by the local genomic context database.
Genomic interval1 901 866-1 902 552 nt687 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 901 866-1 903 598 ntGCF_015732535::NZ_CP021319.1::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015732535::NZ_CP021319.1::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP021319.1All displayed genes belong to this local TCS context.
Neighborhood span1 901 866-1 903 598 nt1 733 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 901 866 nt1 903 598 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CDIF101085_RS09025GCF_015732535#CDIF101085_RS09025
RROmpRCurrent focus
1 901 866-1 902 552 nt · Forward (+)
CDIF101085_RS09030GCF_015732535#CDIF101085_RS09030
HKClassic
1 902 561-1 903 598 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000531165#BN166_RS00115Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1305345
Simplified PFAM architecture for RROC_1305345
PFAM domain coverage: 184 / 228 aa (80.7%)
1 aa228 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[149-223]
- Domain count: 2
- Matched identifier: RROC_1305345
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 149-223 ; Trans_reg_C 149-223
Cluster members and taxonomy
Representative gene: GCF_000531165#BN166_RS00115
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_015732535
AssemblyASM1573253v1 · Complete Genomehaploid
Genome composition4 045 635 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 102 · HK 49 · RR 53CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key