1 Response_reg#1
5-112 aa · 108 aa · 91.5% of protein
Raw token
Response_reg:5:0.000000000000206:112:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDIF101085_RS03445
Response regulator, CheY family
Clostridioides difficile · GCF_015732535
ClassRRTypeCheYLength118 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_015732535#CDIF101085_RS03445Stable P2CS identifier used across views.
GenomeGCF_015732535Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length118 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage108 / 118 aa (91.5%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa118 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:5:0.000000000000206:112:109:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_015732535::NZ_CP021319.1::G00011
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span680914-681270Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCDIF101085_00705RefSeq proteinWP_022616322.1
Context group ID
GCF_015732535::NZ_CP021319.1::G00011Context members
CDIF101085_RS03445
Partner locus tags
CDIF101085_RS03445
Partner old locus tags
CDIF101085_00705
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_022616322.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDIF101085_RS03445Primary locus identifier stored in the genes table.
Old locus tagCDIF101085_00705Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP021319.1Sequence record reported by the local genomic context database.
Genomic interval680 914-681 270 nt357 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span680 914-681 270 ntGCF_015732535::NZ_CP021319.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015732535::NZ_CP021319.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP021319.1All displayed genes belong to this local TCS context.
Neighborhood span680 914-681 270 nt357 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
680 914 nt681 270 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CDIF101085_RS03445GCF_015732535#CDIF101085_RS03445
RRCheYCurrent focus
680 914-681 270 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000531165#BN166_RS00165Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2456388
Simplified PFAM architecture for RROC_2456388
PFAM domain coverage: 99 / 118 aa (83.9%)
1 aa118 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[5-103]
- Domain count: 1
- Matched identifier: RROC_2456388
- Positioned domains: Response_reg 5-103 ; Response_reg 5-103
Cluster members and taxonomy
Representative gene: GCF_000531165#BN166_RS00165
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_015732535
AssemblyASM1573253v1 · Complete Genomehaploid
Genome composition4 045 635 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 102 · HK 49 · RR 53CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key