1 Response_reg#1
8-122 aa · 115 aa · 55.3% of protein
Raw token
Response_reg:8:2.4e-17:122:116:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDIF101085_RS03425
Response regulator NarL family
Clostridioides difficile · GCF_015732535
ClassRRTypeNarLLength208 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_015732535#CDIF101085_RS03425Stable P2CS identifier used across views.
GenomeGCF_015732535Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length208 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage172 / 208 aa (82.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa208 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
142-198 aa · 57 aa · 27.4% of protein
Raw token
HTH_LUXR:142:2.99e-19:198:57:58- Raw architecture: Response_reg:8:2.4e-17:122:116:111#HTH_LUXR:142:2.99e-19:198:57:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_015732535::NZ_CP021319.1::G00010
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span675721-676347Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCDIF101085_00701RefSeq proteinWP_022616318.1
Context group ID
GCF_015732535::NZ_CP021319.1::G00010Context members
CDIF101085_RS03425
Partner locus tags
CDIF101085_RS03425
Partner old locus tags
CDIF101085_00701
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_022616318.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDIF101085_RS03425Primary locus identifier stored in the genes table.
Old locus tagCDIF101085_00701Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP021319.1Sequence record reported by the local genomic context database.
Genomic interval675 721-676 347 nt627 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span675 721-676 347 ntGCF_015732535::NZ_CP021319.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015732535::NZ_CP021319.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP021319.1All displayed genes belong to this local TCS context.
Neighborhood span675 721-676 347 nt627 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
675 721 nt676 347 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CDIF101085_RS03425GCF_015732535#CDIF101085_RS03425
RRNarLCurrent focus
675 721-676 347 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015732535#CDIF101085_RS03425The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2063326
Simplified PFAM architecture for RROC_2063326
PFAM domain coverage: 171 / 208 aa (82.2%)
1 aa208 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[8-122] | GerE[143-198]
- Domain count: 2
- Matched identifier: RROC_2063326
- Positioned domains: Response_reg 8-122 ; GerE 143-198
Cluster members and taxonomy
Representative gene: GCF_015732535#CDIF101085_RS03425
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_015732535
AssemblyASM1573253v1 · Complete Genomehaploid
Genome composition4 045 635 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 102 · HK 49 · RR 53CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key